Evidence map›Paper›PMID 18573180›Full record

ArticleMolecular microbiology2008

Helicobacter pylori AddAB helicase-nuclease and RecA promote recombination-related DNA repair and survival during stomach colonization.

Susan K Amundsen, Jutta Fero, Lori M Hansen, Gareth A Cromie, Jay V Solnick, Gerald R Smith, Nina R Salama

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 96 citations in OpenAlex.

  1. Review
  2. RecBCD enzyme: mechanistic insights from mutants of a complex helicase-nuclease.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Article
  10. Daphnetin: A Novel Anti-International journal of molecular sciences · 2019
    Article
  11. Co-culture of a Novel Fermentative Bacterium,Frontiers in microbiology · 2018
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Genome-wide survey of codons under diversifying selection in a highly recombining bacterial species, Helicobacter pylori.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Susan K AmundsenBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Jutta Fero
Lori M Hansen
Gareth A Cromie
Jay V Solnick
Gerald R Smith
Nina R Salama
Division of Undergraduate Education · USFred Hutch Cancer Center · US

Funding

MOLECULAR ANALYSIS OF HOTSPOTS OF GENETIC RECOMBINATIONR01GM031693 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SMITH, GERALD R · 1985 to 2015
$9.7M
GENETIC REQUIREMENTS OF HELICOBACTER PYLORI INFECTIONR01AI054423 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Nina Salama · 2004 to 2026
$9.5M
Gene expression during H. pylori-host interactionsR01AI042081 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI SOLNICK, JAY V. · 1998 to 2007
$2.5M
Molecular Analysis of Hotspots of Genetic RecombinationR56GM031693 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SMITH, GERALD R · 2007 to 2007
$586k
NIAID NIH HHS AI054423NIAID NIH HHS AI42081NIAID NIH HHS R01 AI042081NIAID NIH HHS R01 AI054423NIGMS NIH HHS GM031693NIGMS NIH HHS R01 GM031693NIGMS NIH HHS R56 GM031693
6 · The paper itself

Abstract

Helicobacter pylori colonization of the human stomach is characterized by profound disease-causing inflammation. Bacterial proteins that detoxify reactive oxygen species or recognize damaged DNA adducts promote infection, suggesting that H. pylori requires DNA damage repair for successful in vivo colonization. The molecular mechanisms of repair remain unknown. We identified homologues of the AddAB class of helicase-nuclease enzymes, related to the Escherichia coli RecBCD enzyme, which, with RecA, is required for repair of DNA breaks and homologous recombination. H. pylori mutants lacking addA or addB genes lack detectable ATP-dependent nuclease activity, and the cloned H. pylori addAB genes restore both nuclease and helicase activities to an E. coli recBCD deletion mutant. H. pylori addAB and recA mutants have a reduced capacity for stomach colonization. These mutants are sensitive to DNA damaging agents and have reduced frequencies of apparent gene conversion between homologous genes encoding outer membrane proteins. Our results reveal requirements for double-strand break repair and recombination during both acute and chronic phases of H. pylori stomach infection.

Indexed as

Bacterial ProteinsDNA HelicasesExodeoxyribonuclease VHelicobacter InfectionsHelicobacter pyloriRec A RecombinasesStomachAmino Acid SequenceAnimalsDNA Breaks, Double-StrandedDNA RepairEscherichia coliExodeoxyribonucleasesFemaleMiceMice, Inbred C57BLAddAB enzymeBacterial ProteinsDNA HelicasesExodeoxyribonucleasesExodeoxyribonuclease VRec A Recombinases

Identifiers

PMID18573180
PMCPMC2680919
OpenAlexW2171841656

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.