Evidence map›Paper›PMID 18565541›Full record

ArticleJournal of molecular biology2008

Modulation of T4 gene 32 protein DNA binding activity by the recombination mediator protein UvsY.

Kiran Pant, Leila Shokri, Richard L Karpel, Scott W Morrical, Mark C Williams

Abstract read
In one paragraph

Article in Journal of molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Mediators of homologous DNA pairing.Cold Spring Harbor perspectives in biology · 2014
    Review
  4. Article
  5. Presynaptic filament dynamics in homologous recombination and DNA repair.Critical reviews in biochemistry and molecular biology · 2011
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kiran PantDepartment of Physics, Northeastern University, Boston, Massachusetts 02115, USA.
Leila Shokri
Richard L Karpel
Scott W Morrical
Mark C Williams

Funding

Single Molecule HIV-1 Replication InteractionsR01GM072462 · NIGMS · NORTHEASTERN UNIVERSITY · PI WILLIAMS, MARK C · 2004 to 2018
$3.9M
ASSEMBLY AND ACTIVATION OF ENZYME/SSDNA COMPLEXESR01GM048847 · NIGMS · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI MORRICAL, SCOTT W · 1993 to 2012
$3.1M
Assembly and Activation of Enzyme-ssDNA ComplexesR56GM048847 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI MORRICAL, SCOTT W · 2007 to 2007
$325k
STRUCTURE/FUNCTION STUDIES ON T4 GENE 32 PROTEINR01GM052049 · NIGMS · UNIVERSITY OF MARYLAND BALT CO CAMPUS · PI KARPEL, RICHARD L · 1997 to 2000
$174k
NIGMS NIH HHS GM072462NIGMS NIH HHS GM48847NIGMS NIH HHS GM 52049NIGMS NIH HHS R01 GM048847NIGMS NIH HHS R01 GM052049NIGMS NIH HHS R01 GM072462NIGMS NIH HHS R56 GM048847
6 · The paper itself

Abstract

Bacteriophage T4 UvsY is a recombination mediator protein that promotes assembly of the UvsX-ssDNA presynaptic filament. UvsY helps UvsX to displace T4 gene 32 protein (gp32) from ssDNA, a reaction necessary for proper formation of the presynaptic filament. Here we use DNA stretching to examine UvsY interactions with single DNA molecules in the presence and absence of gp32 and a gp32 C-terminal truncation (*I), and show that in both cases UvsY is able to destabilize gp32-ssDNA interactions. In these experiments UvsY binds more strongly to dsDNA than ssDNA due to its inability to wrap ssDNA at high forces. To support this hypothesis, we show that ssDNA created by exposure of stretched DNA to glyoxal is strongly wrapped by UvsY, but wrapping occurs only at low forces. Our results demonstrate that UvsY interacts strongly with stretched DNA in the absence of other proteins. In the presence of gp32 and *I, UvsY is capable of strongly destabilizing gp32-DNA complexes in order to facilitate ssDNA wrapping, which in turn prepares the ssDNA for presynaptic filament assembly in the presence of UvsX. Thus, UvsY mediates UvsX binding to ssDNA by converting rigid gp32-DNA filaments into a structure that can be strongly bound by UvsX.

Indexed as

Recombination, GeneticBacteriophage T4DNA-Binding ProteinsDNA, Single-StrandedKineticsMembrane ProteinsModels, BiologicalModels, ChemicalModels, MolecularMutationNucleic Acid ConformationProtein Structure, SecondarySodium ChlorideTemperatureThermodynamicsTrypsinDNA-Binding ProteinsDNA, Single-Strandedgp32 protein, Enterobacteria phage T4Membrane ProteinsSodium ChlorideTrypsinUvsY protein, Enterobacteria phage T4Viral Proteins

Identifiers

PMID18565541
PMCPMC2527458

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.