Evidence map›Paper›PMID 18562308›Full record

ArticleThe Journal of biological chemistry2008

Quantitative analysis of the high temperature-induced glycolytic flux increase in Saccharomyces cerevisiae reveals dominant metabolic regulation.

Jarne Postmus, André B Canelas, Jildau Bouwman, Barbara M Bakker, Walter van Gulik, M Joost Teixeira de Mattos, Stanley Brul, Gertien J Smits

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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  16. Selection and subsequent physiological characterization of industrialBiotechnology reports (Amsterdam, Netherlands) · 2020
    Article
  17. Frontiers in microbiology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jarne PostmusDepartment of Molecular Biology and Microbial Food Safety, University of Amsterdam, Nieuwe Achtergracht 166, Amsterdam.
André B Canelas
Jildau Bouwman
Barbara M Bakker
Walter van Gulik
M Joost Teixeira de Mattos
Stanley Brul
Gertien J Smits

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A major challenge in systems biology lies in the integration of processes occurring at different levels, such as transcription, translation, and metabolism, to understand the functioning of a living cell in its environment. We studied the high temperature-induced glycolytic flux increase in Saccharomyces cerevisiae and investigated the regulatory mechanisms underlying this increase. We used glucose-limited chemostat cultures to separate regulatory effects of temperature from effects on growth rate. Growth at increased temperature (38 degrees C versus 30 degrees C) resulted in a strongly increased glycolytic flux, accompanied by a switch from respiration to a partially fermentative metabolism. We observed an increased flux through all enzymes, ranging from 5- to 10-fold. We quantified the contributions of direct temperature effects on enzyme activities, the gene expression cascade and shifts in the metabolic network, to the increased flux through each enzyme. To do this we adapted flux regulation analysis. We show that the direct effect of temperature on enzyme kinetics can be included as a separate term. Together with hierarchical regulation and metabolic regulation, this term explains the total flux change between two steady states. Surprisingly, the effect of the cultivation temperature on enzyme catalytic capacity, both directly through the Arrhenius effect and indirectly through adapted gene expression, is only a moderate contribution to the increased glycolytic flux for most enzymes. The changes in flux are therefore largely caused by changes in the interaction of the enzymes with substrates, products, and effectors.

Indexed as

Adaptation, PhysiologicalEnzymesGene Expression Regulation, EnzymologicGene Expression Regulation, FungalGlycolysisHot TemperatureSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsEnzymesSaccharomyces cerevisiae Proteins

Identifiers

PMID18562308
PMCPMC3259761

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.