Evidence map›Paper›PMID 18560010›Full record

ReviewProtein science : a publication of the Protein Society2008

Allostery and cooperativity revisited.

Qiang Cui, Martin Karplus

Abstract readReview
In one paragraph

Review in Protein science : a publication of the Protein Society, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 329 papers.

0numbers the graph read from it
0cells of the map it votes in
329citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

329 citing papers in PubMed.

  1. Article
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  7. Review
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  10. Review
  11. Article
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  13. The Allosteric Mechanism of G-Protein-Coupled Receptors is Induced Fit, Not Conformational Selection.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  14. Merging different allosteric mechanisms: The case ofProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  15. Review
  16. Review
  17. Review
  18. How residence time works in allosteric drugs.Current opinion in structural biology · 2025
    Review
  19. Article
  20. Review

269 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Qiang CuiDepartment of Chemistry and Theoretical Chemistry Institute, University of Wisconsin, Madison, Wisconsin 53706, USA.
Martin Karplus

Funding

THEORETICAL SUTDIES OF BIOMOLECULESR01GM030804 · NIGMS · HARVARD UNIVERSITY · PI KARPLUS, MARTIN · 1985 to 2011
$2.7M
Coupling between conformation and chemistry in enzymesR01GM071428 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CUI, QIANG · 2005 to 2009
$976k
NIGMS NIH HHS G01-GM071428NIGMS NIH HHS R01 GM030804NIGMS NIH HHS R01 GM071428NIGMS NIH HHS R01-GM30804
6 · The paper itself

Abstract

Although phenomenlogical models that account for cooperativity in allosteric systems date back to the early and mid-60's (e.g., the KNF and MWC models), there is resurgent interest in the topic due to the recent experimental and computational studies that attempted to reveal, at an atomistic level, how allostery actually works. In this review, using systems for which atomistic simulations have been carried out in our groups as examples, we describe the current understanding of allostery, how the mechanisms go beyond the classical MWC/Pauling-KNF descriptions, and point out that the "new view" of allostery, emphasizing "population shifts," is, in fact, an "old view." The presentation offers not only an up-to-date description of allostery from a theoretical/computational perspective, but also helps to resolve several outstanding issues concerning allostery.

Indexed as

Allosteric SiteAllosteric RegulationAnimalsDimerizationHemoglobinsHumansModels, MolecularProteinsProtein Structure, QuaternaryProtein Structure, TertiaryHemoglobinsProteins

Identifiers

PMID18560010
PMCPMC2492820

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.