Evidence map›Paper›PMID 18559593›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2008

ssDNA-binding protein 2 is frequently hypermethylated and suppresses cell growth in human prostate cancer.

Jun-Wei Liu, Jatin K Nagpal, Wenyue Sun, Juna Lee, Myoung Sook Kim, Kimberly L Ostrow, Shaoyu Zhou, Carmen Jeronimo, Rui Henrique, Wim Van Criekinge and 4 more

Open access · bronzeAbstract read
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Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 35 citations in OpenAlex.

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  12. Crystal structure of the LUFS domain of human single-stranded DNA binding Protein 2 (SSBP2).Protein science : a publication of the Protein Society · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Jun-Wei LiuDivision of Head and Neck Cancer Research, Department of Otolaryngology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Jatin K Nagpal
Wenyue Sun
Juna Lee
Myoung Sook Kim
Kimberly L Ostrow
Shaoyu Zhou
Carmen Jeronimo
Rui Henrique
Wim Van Criekinge
Chu So Moon
Joseph A Califano
Barry Trink
David Sidransky
Johns Hopkins University · USJohns Hopkins Medicine · USInstituto Português de Oncologia Francisco Gentil · PT

Funding

INTEGRATED DEVELOPMENT OF NOVEL MOLECULAR MARKERSU01CA084986 · NCI · JOHNS HOPKINS UNIVERSITY · PI SIDRANSKY, DAVID · 1999 to 2014
$33.8M
NCI NIH HHS U01 CA084986
6 · The paper itself

Abstract

purposeProstate cancer is a major cause of cancer death among men and the development of new biomarkers is important to augment current detection approaches. EXPERIMENTAL

designWe identified hypermethylation of the ssDNA-binding protein 2 (SSBP2) promoter as a potential DNA marker for human prostate cancer based on previous bioinformatics results and pharmacologic unmasking microarray. We then did quantitative methylation-specific PCR in primary prostate cancer tissues to confirm hypermethylation of the SSBP2 promoter, and analyzed its correlation with clinicopathologic data. We further examined SSBP2 expression in primary prostate cancer and studied its role in cell growth.

resultsQuantitative methylation-specific PCR results showed that the SSBP2 promoter was hypermethylated in 54 of 88 (61.4%) primary prostate cancers versus 0 of 23 (0%) in benign prostatic hyperplasia using a cutoff value of 120. Furthermore, we found that expression of SSBP2 was down-regulated in primary prostate cancers and cancer cell lines. Hypermethylation of the SSBP2 promoter and its expression were closely associated with higher stages of prostate cancer. Reactivation of SSBP2 expression by the demethylating agent 5-aza-2'-deoxycytidine in prostate cancer cell lines confirmed epigenetic inactivation as one major mechanism of SSBP2 regulation. Moreover, forced expression of SSBP2 inhibited prostate cancer cell proliferation in the colony formation assay and caused cell cycle arrest.

conclusionSSBP2 inhibits prostate cancer cell proliferation and seems to represent a novel prostate cancer-specific DNA marker, especially in high stages of human prostate cancer.

Indexed as

Cell ProliferationDNA MethylationAdenocarcinomaAgedAzacitidineBase SequenceBiomarkers, TumorCell CycleDecitabineDNA-Binding ProteinsDNA Mutational AnalysisGene Expression Regulation, NeoplasticHumansMaleMiddle AgedMolecular Sequence DataAzacitidineBiomarkers, TumorDecitabineDNA-Binding ProteinsSSBP2 protein, human

Identifiers

PMID18559593
PMCPMC3082869
OpenAlexW2054806083

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.