Evidence map›Paper›PMID 18558711›Full record

ArticleBiochemistry2008

Quantification of ligand-regulated nuclear receptor corepressor and coactivator binding, key interactions determining ligand potency and efficacy for the thyroid hormone receptor.

M Jeyakumar, Paul Webb, John D Baxter, Thomas S Scanlan, John A Katzenellenbogen

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. The Binding ofPharmaceutics · 2022
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Non-monotonic dose responses in studies of endocrine disrupting chemicals: bisphenol a as a case study.Dose-response : a publication of International Hormesis Society · 2014
    Article
  9. Mechanisms enforcing the estrogen receptor β selectivity of botanical estrogens.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2013
    Article
  10. Article
  11. Review
  12. Structural basis for negative cooperativity within agonist-bound TR:RXR heterodimers.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

M JeyakumarDepartment of Chemistry, University of Illinois, Urbana, Illinois 61801, USA.
Paul Webb
John D Baxter
Thomas S Scanlan
John A Katzenellenbogen
University of California, San Francisco · USOregon Health & Science University · USUniversity of Illinois Urbana-Champaign · US

Funding

PHYTOESTROGENS AND AGING: DOSE, TIMING &TISSUEP01AG024387 · NIA · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI HELFERICH, WILLIAM G · 2004 to 2008
$7.8M
Thyroid Hormone ActionR01DK052798 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCANLAN, THOMAS STERLING · 1997 to 2020
$5.7M
MOLECULAR PROBES FOR STEROID RECEPTORSR37DK015556 · NIDDK · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KATZENELLENBOGEN, JOHN A. · 1987 to 2012
$4.4M
Novel Ligands and Mechanisms to Achieve Selective Nuclear Receptor ActivityR01DK015556 · NIDDK · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KATZENELLENBOGEN, JOHN A. · 1986 to 2016
$1.6M
Selective Modulation of Thyroid Receptor ActionR01DK064148 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BAXTER, JOHN D · 2004 to 2007
$1.3M
NIA NIH HHS P01 AG024387NIDDK NIH HHS R01 DK015556NIDDK NIH HHS R01 DK052798NIDDK NIH HHS R01 DK064148NIDDK NIH HHS R37 DK015556
6 · The paper itself

Abstract

The potency and efficacy of ligands for nuclear receptors (NR) result both from the affinity of the ligand for the receptor and from the affinity that various coregulatory proteins have for ligand-receptor complexes; the latter interaction, however, is rarely quantified. To understand the molecular basis for ligand potency and efficacy, we developed dual time-resolved fluorescence resonance energy transfer (tr-FRET) assays and quantified binding of both ligand and coactivator or corepressor to the thyroid hormone receptor (TR). Promoter-bound TR exerts dual transcriptional regulatory functions, recruiting corepressor proteins and repressing transcription in the absence of thyroid hormones (THs) and shedding corepressors in favor of coactivators upon binding agonists, activating transcription. Our tr-FRET assays involve a TRE sequence labeled with terbium (fluorescence donor), TRbeta.RXRalpha heterodimer, and fluorescein-labeled NR interaction domains of coactivator SRC3 or corepressor NCoR (fluorescence acceptors). Through coregulator titrations, we could determine the affinity of SRC3 or NCoR for TRE-bound TR.RXR heterodimers, unliganded or saturated with different THs. Alternatively, through ligand titrations, we could determine the relative potencies of different THs. The order of TR agonist potencies is as follows: GC-1 approximately T 3 approximately TRIAC approximately T 4 >> rT 3 (for both coactivator recruitment and corepressor dissociation); the affinities of SRC3 binding to TR-ligand complexes followed a similar trend. This highlights the fact that the low activity of rT 3 is derived both from its low affinity for TR and from the low affinity of SRC for the TR-rT 3 complex. The TR antagonist NH-3 failed to induce SRC3 recruitment but did effect NCoR dissociation. These assays provide quantitative information about the affinity of two key interactions that are determinants of NR ligand potency and efficacy.

Indexed as

Base SequenceBinding SitesHistone AcetyltransferasesHumansKineticsLigandsMolecular Sequence DataMolecular WeightNuclear ProteinsNuclear Receptor Coactivator 3Nuclear Receptor Co-Repressor 1Promoter Regions, GeneticReceptors, Thyroid HormoneRepressor ProteinsSpectrometry, FluorescenceThyroxineHistone AcetyltransferasesLigandsNCOA3 protein, humanNCOR1 protein, humanNuclear ProteinsNuclear Receptor Coactivator 3Nuclear Receptor Co-Repressor 1Receptors, Thyroid HormoneRepressor ProteinsThyroxineTrans-ActivatorsTriiodothyronine

Identifiers

PMID18558711
PMCPMC2574600
OpenAlexW2012017889

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.