Evidence map›Paper›PMID 18554279›Full record

ArticleClinical genetics2008

Isolated growth hormone deficiency type II caused by a point mutation that alters both splice site strength and splicing enhancer function.

N Shariat, C D Holladay, R K Cleary, J A Phillips, J G Patton

Open access · greenAbstract read
In one paragraph

Article in Clinical genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

N ShariatDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235, USA.
C D Holladay
R K Cleary
J A Phillips
J G Patton
Vanderbilt University · US

Funding

GH Alternative Splicing: Mechanisms and DiseaseR01DK035592 · NIDDK · VANDERBILT UNIVERSITY · PI PHILLIPS III, JOHN ATLAS · 1986 to 2009
$3.1M
NIDDK NIH HHS DK 035592NIDDK NIH HHS R01 DK035592
6 · The paper itself

Abstract

A heterozygous single base mutation in the human growth hormone (GH) gene (GH-1) was identified in a family presenting with isolated GH deficiency type II (IGHD II). Affected individuals have a guanine to adenine transition at the first nucleotide of exon 3 (E3+1 G-->A) that results in exon skipping and production of a dominant-negative 17.5-kDa isoform. We show that the mechanistic basis for exon skipping is due to the unique position of this mutation because it weakens the 3' splice site and simultaneously disrupts a splicing enhancer located within the first seven bases of exon 3. A G-->T mutation at this same position not only affects splicing but also results in a premature stop codon for those transcripts that include exon 3. Thus, mutations that alter the first nucleotide of exon 3 illustrate the various mechanisms by which changes in sequence can cause disease: splice site selection, splicing enhancer function, messenger RNA decay, missense mutations, and nonsense mutations. For IGHD II, only exon skipping leads to production of the dominant-negative isoform, with increasing skipping correlating with increasing disease severity.

Indexed as

Cells, CulturedChild, PreschoolExonsFemaleHuman Growth HormoneHumansInfantMaleMetabolic DiseasesMutationPedigreePoint MutationRNA InterferenceRNA Splice SitesRNA SplicingHuman Growth HormoneRNA Splice Sites

Identifiers

PMID18554279
PMCPMC4445398
OpenAlexW1967844258

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.