Evidence map›Paper›PMID 18553105›Full record

ArticleMolecular genetics and genomics : MGG2008

Molecular tagging of the Bph1 locus for resistance to brown planthopper (Nilaparvata lugens Stål) through representational difference analysis.

Dong-Soo Park, Min-Young Song, Soo-Kwon Park, Sang-Kyu Lee, Jong-Hee Lee, Song-Yi Song, Moo Young Eun, Tae-Ryong Hahn, Jae-Keun Sohn, Gihwan Yi and 2 more

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Article in Molecular genetics and genomics : MGG, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Dong-Soo ParkRice Division, Yeongnam Agricultural Research Institute, National Institute of Crop Science, RDA, Milyang, South Korea.
Min-Young Song
Soo-Kwon Park
Sang-Kyu Lee
Jong-Hee Lee
Song-Yi Song
Moo Young Eun
Tae-Ryong Hahn
Jae-Keun Sohn
Gihwan Yi
Min-Hee Nam
Jong-Seong Jeon

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During brown planthopper (BPH) feeding on rice plants, we employed a modified representational difference analysis (RDA) method to detect rare transcripts among those differentially expressed in SNBC61, a BPH resistant near-isogenic line (NIL) carrying the Bph1 resistance gene. This identified 3 RDA clones: OsBphi237, OsBphi252 and OsBphi262. DNA gel-blot analysis revealed that the loci of the RDA clones in SNBC61 corresponded to the alleles of the BPH resistant donor Samgangbyeo. Expression analysis indicated that the RDA genes were up-regulated in SNBC61 during BPH feeding. Interestingly, analysis of 64 SNBC NILs, derived from backcrosses of Samgangbyeo with a BPH susceptible Nagdongbyeo, using a cleaved amplified polymorphic sequence (CAPS) marker indicated that OsBphi252, which encodes a putative lipoxygenase (LOX), co-segregates with BPH resistance. Our results suggest that OsBphi252 is tightly linked to Bph1, and may be useful in marker-assisted selection (MAS) for resistance to BPH.

Indexed as

Genes, PlantAnimalsBase SequenceChromosome MappingChromosomes, PlantDNA, PlantGene ExpressionHemipteraHost-Pathogen InteractionsOryzaPhenotypePlant DiseasesDNA, Plant

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.