ArticleJournal of experimental botany2008
A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit.
Article in Journal of experimental botany, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 47 citations in OpenAlex.
- Multi-gene metabolic engineering of tomato plants results in increased fruit yield up to 23%.Scientific reports · 2020Article
- Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Development and use of chromosome segment substitution lines as a genetic resource for crop improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Review
- Expression of a Chloroplast-Targeted Cyanobacterial Flavodoxin in Tomato Plants Increases Harvest Index by Altering Plant Size and Productivity.Frontiers in plant science · 2019Article
- Structural basis for a novel type of cytokinin-activating protein.Scientific reports · 2017Article
- QTL Analyses in Multiple Populations Employed for the Fine Mapping and Identification of Candidate Genes at a Locus Affecting Sugar Accumulation in Melon (Frontiers in plant science · 2017Article
- Identification of Loci Affecting Accumulation of Secondary Metabolites in Tomato Fruit of aFrontiers in plant science · 2016Article
- Mapping Quantitative Trait Loci Affecting Biochemical and Morphological Fruit Properties in Eggplant (Solanum melongena L.).Frontiers in plant science · 2016Article
- Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato.Journal of experimental botany · 2013Article
- Co-mapping studies of QTLs for fruit acidity and candidate genes of organic acid metabolism and proton transport in sweet melon (Cucumis melo L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Article
- The genetic architecture of branched-chain amino acid accumulation in tomato fruits.Journal of experimental botany · 2011Article
- Genetic dissection of vitamin E biosynthesis in tomato.Journal of experimental botany · 2011Article
- Combining ecophysiological modelling and quantitative trait locus analysis to identify key elementary processes underlying tomato fruit sugar concentration.Journal of experimental botany · 2011Article
- Ascorbate biosynthesis during early fruit development is the main reason for its accumulation in kiwi.PloS one · 2010Article
- miSolRNA: A tomato micro RNA relational database.BMC plant biology · 2010Article
- The influence of fruit load on the tomato pericarp metabolome in a Solanum chmielewskii introgression line population.Plant physiology · 2010Article
- solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database.BMC bioinformatics · 2010Article
- A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Comparative physiology of elemental distributions in plants.Annals of botany · 2010Review
Corrections and comments
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Authors and funding
9 authors at 5 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In tomato, numerous wild-related species have been demonstrated to be untapped sources of valuable genetic variability, including pathogen-resistance genes, nutritional, and industrial quality traits. From a collection of S. pennellii introgressed lines, 889 fruit metabolic loci (QML) and 326 yield-associated loci (YAL), distributed across the tomato genome, had been identified previously. By using a combination of molecular marker sequence analysis, PCR amplification and sequencing, analysis of allelic variation, and evaluation of co-response between gene expression and metabolite composition traits, the present report, provides a comprehensive list of candidate genes co-localizing with a subset of 106 QML and 20 YAL associated either with important agronomic or nutritional characteristics. This combined strategy allowed the identification and analysis of 127 candidate genes located in 16 regions of the tomato genome. Eighty-five genes were cloned and partially sequenced, totalling 45,816 and 45,787 bases from S. lycopersicum and S. pennellii, respectively. Allelic variation at the amino acid level was confirmed for 37 of these candidates. Furthermore, out of the 127 gene-metabolite co-locations, some 56 were recovered following correlation of parallel transcript and metabolite profiling. Results obtained here represent the initial steps in the integration of genetic, genomic, and expressional patterns of genes co-localizing with chemical compositional traits of the tomato fruit.
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