Evidence map›Paper›PMID 18552128›Full record

ArticleProtein science : a publication of the Protein Society2008

The structure of "defective in induced resistance" protein of Arabidopsis thaliana, DIR1, reveals a new type of lipid transfer protein.

Marie-Bernard Lascombe, Bénédicte Bakan, Nathalie Buhot, Didier Marion, Jean-Pierre Blein, Valéry Larue, Chris Lamb, Thierry Prangé

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 93 citations in OpenAlex.

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  12. The Resistance of Narrow-Leafed Lupin toInternational journal of molecular sciences · 2021
    Article
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  16. Non-Specific Lipid Transfer Proteins inPathogens (Basel, Switzerland) · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Marie-Bernard LascombeUniversité Paris Descartes, CNRS, Laboratoire de Cristallographie et RMN Biologiques (UMR 8015), Paris 75006, France.
Bénédicte Bakan
Nathalie Buhot
Didier Marion
Jean-Pierre Blein
Valéry Larue
Chris Lamb
Thierry Prangé
Centre National de la Recherche Scientifique · FRInstitut National de la Recherche Agronomique · MAJohn Innes Centre · GBDélégation Paris 5 · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Screening of transfer DNA (tDNA) tagged lines of Arabidopsis thaliana for mutants defective in systemic acquired resistance led to the characterization of dir1-1 (defective in induced resistance [systemic acquired resistance, SAR]) mutant. It has been suggested that the protein encoded by the dir1 gene, i.e., DIR1, is involved in the long distance signaling associated with SAR. DIR1 displays the cysteine signature of lipid transfer proteins, suggesting that the systemic signal could be lipid molecules. However, previous studies have shown that this signature is not sufficient to define a lipid transfer protein, i.e., a protein capable of binding lipids. In this context, the lipid binding properties and the structure of a DIR1-lipid complex were both determined by fluorescence and X-ray diffraction. DIR1 is able to bind with high affinity two monoacylated phospholipids (dissociation constant in the nanomolar range), mainly lysophosphatidyl cholines, side-by-side in a large internal tunnel. Although DIR1 shares some structural and lipid binding properties with plant LTP2, it displays some specific features that define DIR1 as a new type of plant lipid transfer protein. The signaling function associated with DIR1 may be related to a specific lipid transport that needs to be characterized and to an additional mechanism of recognition by a putative receptor, as the structure displays on the surface the characteristic PxxP structural motif reminiscent of SH3 domain signaling pathways.

Indexed as

Amino Acid MotifsAmino Acid SequenceAntigens, PlantArabidopsisArabidopsis ProteinsCarrier ProteinsConsensus SequenceCysteineDisulfidesFatty Acid-Binding ProteinsHydrophobic and Hydrophilic InteractionsIsoelectric PointModels, MolecularMolecular Sequence DataMolecular WeightMutationAntigens, PlantArabidopsis ProteinsCarrier ProteinsCysteinedir1-1 protein, ArabidopsisDisulfidesFatty Acid-Binding Proteinslipid transfer proteins, plantPeptidesPhospholipidsPlant ProteinspolyprolineZinc

Identifiers

PMID18552128
PMCPMC2525531
OpenAlexW2055810016

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.