Evidence map›Paper›PMID 18550807›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

DEAF-1 regulates immunity gene expression in Drosophila.

Darien E Reed, Xinhua M Huang, James A Wohlschlegel, Michael S Levine, Kate Senger

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 46 citations in OpenAlex.

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  6. TheInternational journal of molecular sciences · 2021
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  9. Disease models & mechanisms · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Darien E ReedHelen Diller Family Comprehensive Cancer Center and Cancer Research Institute, University of California, San Francisco, CA 94115-0128, USA.
Xinhua M Huang
James A Wohlschlegel
Michael S Levine
Kate Senger
University of California, Los Angeles · USUniversity of California, Berkeley · USUniversity of California, San Francisco · US

Funding

MOLECULAR CHARACTERIZATION OF THE DORSAL MORPHOGENR37GM046638 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI LEVINE, MICHAEL STEVEN · 2003 to 2012
$3.8M
MOLECULAR CHARACTERIZATION OF THE DORSAL MORPHOGENR01GM046638 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI LEVINE, MICHAEL STEVEN · 1991 to 2016
$2.3M
NIGMS NIH HHS GM46638NIGMS NIH HHS R01 GM046638NIGMS NIH HHS R37 GM046638
6 · The paper itself

Abstract

Immunity genes are activated in the Drosophila fat body by Rel and GATA transcription factors. Here, we present evidence that an additional regulatory factor, deformed epidermal autoregulatory factor-1 (DEAF-1), also contributes to the immune response and is specifically important for the induction of two genes encoding antimicrobial peptides, Metchnikowin (Mtk) and Drosomycin (Drs). The systematic mutagenesis of a minimal Mtk 5' enhancer identified a sequence motif essential for both a response to LPS preparations in S2 cells and activation in the larval fat body in response to bacterial infection. Using affinity chromatography coupled to multidimensional protein identification technology (MudPIT), we identified DEAF-1 as a candidate regulator. DEAF-1 activates the expression of Mtk and Drs promoter-luciferase fusion genes in S2 cells. SELEX assays and footprinting data indicate that DEAF-1 binds to and activates Mtk and Drs regulatory DNAs via a TTCGGBT motif. The insertion of this motif into the Diptericin (Dpt) regulatory region confers DEAF-1 responsiveness to this normally DEAF-1-independent enhancer. The coexpression of DEAF-1 with Dorsal, Dif, and Relish results in the synergistic activation of transcription. We propose that DEAF-1 is a regulator of Drosophila immunity.

Indexed as

Transcriptional ActivationAnimalsAntimicrobial Cationic PeptidesBase SequenceDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEnhancer Elements, GeneticGene FusionGenes, ReporterImmunityLipopolysaccharidesLuciferasesMolecular Sequence DataMutagenesisMutationAntimicrobial Cationic PeptidesDeaf1 protein, DrosophilaDif protein, Drosophiladl protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsDRS protein, DrosophilaLipopolysaccharidesLuciferasesMtk protein, DrosophilaNuclear ProteinsPhosphoproteinsRel protein, DrosophilaTranscription Factors

Identifiers

PMID18550807
PMCPMC2448840
OpenAlexW2050610589

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.