ArticleGenome biology2008
Anni 2.0: a multipurpose text-mining tool for the life sciences.
Article in Genome biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
52 citing papers in PubMed.
- A systematic review on literature-based discovery workflow.PeerJ. Computer science · 2019Article
- Review of Drug Repositioning Approaches and Resources.International journal of biological sciences · 2018Review
- Internal driving factors leading to extrahepatic manifestation of the hepatitis C virus infection.International journal of molecular medicine · 2017Article
- Enriching plausible new hypothesis generation in PubMed.PloS one · 2017Article
- Common disease signatures from gene expression analysis in Huntington's disease human blood and brain.Orphanet journal of rare diseases · 2016Article
- Beegle: from literature mining to disease-gene discovery.Nucleic acids research · 2016Article
- Building a glaucoma interaction network using a text mining approach.BioData mining · 2016Article
- Biomolecular Relationships Discovered from Biological Labyrinth and Lost in Ocean of Literature: Community Efforts Can Rescue Until Automated Artificial Intelligence Takes Over.Frontiers in genetics · 2016Article
- Article
- Tissue Restricted Splice Junctions Originate Not Only from Tissue-Specific Gene Loci, but Gene Loci with a Broad Pattern of Expression.PloS one · 2015Article
- Sub-chronic toxicity study in rats orally exposed to nanostructured silica.Particle and fibre toxicology · 2014Article
- Alzheimer's disease and HLA-A2: linking neurodegenerative to immune processes through an in silico approach.BioMed research international · 2014Article
- Structuring research methods and data with the research object model: genomics workflows as a case study.Journal of biomedical semantics · 2014Article
- Transcriptomic characterization of C57BL/6 mouse embryonic stem cell differentiation and its modulation by developmental toxicants.PloS one · 2014Article
- Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications.Journal of biomedical semantics · 2014Article
- Article
- Treatment of mouse liver slices with cholestatic hepatotoxicants results in down-regulation of Fxr and its target genes.BMC medical genomics · 2013Article
- Article
- Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data.BMC medical genomics · 2013Article
- Mining MEDLINE for problems associated with vitamin D.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Anni 2.0 is an online tool (http://biosemantics.org/anni/) to aid the biomedical researcher with a broad range of information needs. Anni provides an ontology-based interface to MEDLINE and retrieves documents and associations for several classes of biomedical concepts, including genes, drugs and diseases, with established text-mining technology. In this article we illustrate Anni's usability by applying the tool to two use cases: interpretation of a set of differentially expressed genes, and literature-based knowledge discovery.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.