Evidence map›Paper›PMID 18548197›Full record

ArticlePlant molecular biology2008

Identification of a novel group of putative Arabidopsis thaliana beta-(1,3)-galactosyltransferases.

Yongmei Qu, Jack Egelund, Paul R Gilson, Fiona Houghton, Paul A Gleeson, Carolyn J Schultz, Antony Bacic

Abstract read
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In one paragraph

Article in Plant molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 92 citations in OpenAlex.

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  15. Cracking the "Sugar Code": A Snapshot ofFrontiers in plant science · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Yongmei QuPlant Cell Biology Research Centre, School of Botany, The University of Melbourne, Melbourne, VIC, Australia.
Jack Egelund
Paul R Gilson
Fiona Houghton
Paul A Gleeson
Carolyn J Schultz
Antony Bacic
University of Melbourne · AUUniversity of Adelaide · AUUniversity of Copenhagen · DKWalter and Eliza Hall Institute of Medical Research · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To begin biochemical and molecular studies on the biosynthesis of the type II arabinogalactan chains on arabinogalactan-proteins (AGPs), we adopted a bioinformatic approach to identify and systematically characterise the putative galactosyltransferases (GalTs) responsible for synthesizing the beta-(1,3)-Gal linkage from CAZy GT-family-31 from Arabidopsis thaliana. These analyses confirmed that 20 members of the GT-31 family contained domains/motifs typical of biochemically characterised beta-(1,3)-GTs from mammalian systems. Microarray data confirm that members of this family are expressed throughout all tissues making them likely candidates for the assembly of the ubiquitously found AGPs. One member, At1g77810, was selected for further analysis including location studies that confirmed its presence in the Golgi and preliminary enzyme substrate specificity studies that demonstrated beta-(1,3)-GalT activity. This bioinformatic/molecular study of CAZy GT-family-31 was validated by the recent report of Strasser et al. (Plant Cell 19:2278-2292, 2007) that another member of this family (At1g26810; GALT1) encodes a beta-(1,3)-GalT involved in the biosynthesis of the Lewis a epitope of N-glycans in Arabidopsis thaliana.

Indexed as

Amino Acid SequenceAnimalsArabidopsisArabidopsis ProteinsChlorocebus aethiopsCOS CellsFluorescent Antibody TechniqueGalactosyltransferasesGolgi ApparatusImmunoblottingMolecular Sequence DataMucoproteinsOligonucleotide Array Sequence AnalysisPhylogenyPlant ProteinsSequence Homology, Amino AcidArabidopsis Proteinsarabinogalactan proteinsGalactosyltransferasesMucoproteinsPlant Proteins

Identifiers

PMID18548197
OpenAlexW1981629037

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.