Evidence map›Paper›PMID 18544707›Full record

ArticleDiabetes2008

Extension of type 2 diabetes genome-wide association scan results in the diabetes prevention program.

Allan F Moore, Kathleen A Jablonski, Jarred B McAteer, Richa Saxena, Toni I Pollin, Paul W Franks, Robert L Hanson, Alan R Shuldiner, William C Knowler, David Altshuler and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Diabetes, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 2 pooled it
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 2 syntheses or guidelines pooled it, 102 citations in OpenAlex.

  1. Gene-lifestyle interaction on risk of type 2 diabetes: A systematic review.Obesity reviews : an official journal of the International Association for the Study of Obesity · 2019
    Pooled it
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  10. Association of theBMJ open diabetes research & care · 2023
    Article
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  12. Molecular pathways dysregulated by PbToxicology research · 2022
    Article
  13. Review
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  15. Article
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  18. THE DIABETES EPIDEMIC IN CHINA: AN INTEGRATED REVIEW OF NATIONAL SURVEYS.Endocrine practice : official journal of the American College of Endocrinology and the American Association of Clinical Endocrinologists · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Allan F MooreCenter for Human Genetic Research, Department of Medicine, Massachusetts General Hospital, Boston, Massachusetts, USA.
Kathleen A Jablonski
Jarred B McAteer
Richa Saxena
Toni I Pollin
Paul W Franks
Robert L Hanson
Alan R Shuldiner
William C Knowler
David Altshuler
Jose C Florez
Diabetes Prevention Program Research Group
Broad Institute · USMassachusetts General Hospital · USNational Institute of Diabetes and Digestive and Kidney Diseases · USUniversity of Maryland, Baltimore · USCenter for Human Genetics · USGeorge Washington University · USUmeå University · SE

Funding

JHU-UMD Diabetes Research CenterP30DK079637 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI AHIMA, REXFORD S. · 2013 to 2017
$9.7M
Post DPP Followup StudyU01DK048406 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DE GROOT, MARY K. · 1994 to 2021
$9.1M
Fine-mapping and Characterization of Metabolic Loci in the DPP Outcomes StudyR01DK072041 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI FLOREZ, JOSE CARLOS · 2005 to 2017
$7.6M
Genetics Of Type 2 Diabetes MellitusZ01DK069028 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI KNOWLER, WILLIAM C · 1990 to 2008
$750k
Native Americans: Diabetes Mellitus/Chronic DiseasesZ01DK069000 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI KNOWLER, WILLIAM C · 1986 to 2008
$680k
Genetic variation in drug targets for type 2 diabetesK23DK065978 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI FLOREZ, JOSE CARLOS · 2004 to 2008
$653k
Intramural NIH HHSNIDDK NIH HHS K23 DK065978NIDDK NIH HHS K23-DK-65978-04NIDDK NIH HHS P30 DK079637NIDDK NIH HHS R01 DK072041NIDDK NIH HHS R01-DK-072041NIDDK NIH HHS U01 DK048406
6 · The paper itself

Abstract

objectiveGenome-wide association scans (GWASs) have identified novel diabetes-associated genes. We evaluated how these variants impact diabetes incidence, quantitative glycemic traits, and response to preventive interventions in 3,548 subjects at high risk of type 2 diabetes enrolled in the Diabetes Prevention Program (DPP), which examined the effects of lifestyle intervention, metformin, and troglitazone versus placebo. RESEARCH DESIGN AND

methodsWe genotyped selected single nucleotide polymorphisms (SNPs) in or near diabetes-associated loci, including EXT2, CDKAL1, CDKN2A/B, IGF2BP2, HHEX, LOC387761, and SLC30A8 in DPP participants and performed Cox regression analyses using genotype, intervention, and their interactions as predictors of diabetes incidence. We evaluated their effect on insulin resistance and secretion at 1 year.

resultsNone of the selected SNPs were associated with increased diabetes incidence in this population. After adjustments for ethnicity, baseline insulin secretion was lower in subjects with the risk genotype at HHEX rs1111875 (P = 0.01); there were no significant differences in baseline insulin sensitivity. Both at baseline and at 1 year, subjects with the risk genotype at LOC387761 had paradoxically increased insulin secretion; adjustment for self-reported ethnicity abolished these differences. In ethnicity-adjusted analyses, we noted a nominal differential improvement in beta-cell function for carriers of the protective genotype at CDKN2A/B after 1 year of troglitazone treatment (P = 0.01) and possibly lifestyle modification (P = 0.05).

conclusionsWe were unable to replicate the GWAS findings regarding diabetes risk in the DPP. We did observe genotype associations with differences in baseline insulin secretion at the HHEX locus and a possible pharmacogenetic interaction at CDKNA2/B.

Indexed as

GenomicsBlack or African AmericanCation Transport ProteinsCyclin-Dependent Kinase 5Cyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16Diabetes Mellitus, Type 2Exostosin 2Gene FrequencyHomeodomain ProteinsHumansIncidenceLife StyleMiddle AgedN-AcetylglucosaminyltransferasesPolymorphism, Single NucleotideCation Transport ProteinsCDKAL1 protein, humanCDKN2B protein, humanCyclin-Dependent Kinase 5Cyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16Exostosin 2HHEX protein, humanHomeodomain ProteinsIGF2BP2 protein, humanN-AcetylglucosaminyltransferasesRNA-Binding ProteinsSLC30A8 protein, humanTranscription FactorstRNA MethyltransferasesZinc Transporter 8

Identifiers

PMID18544707
PMCPMC2518503
OpenAlexW2128396240

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.