Evidence map›Paper›PMID 18544024›Full record

ArticleAIDS research and human retroviruses2008

HIV type 2 protease, reverse transcriptase, and envelope viral variation in the PBMC and genital tract of ARV-naive women in Senegal.

Geoffrey S Gottlieb, Stephen E Hawes, Kim G Wong, Dana N Raugi, Habibatou D Agne, Cathy W Critchlow, Nancy B Kiviat, Papa Salif Sow

Open access · greenAbstract read
In one paragraph

Article in AIDS research and human retroviruses, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. A Comparison of the Natural History of HPV Infection and Cervical Abnormalities among HIV-Positive and HIV-Negative Women in Senegal, Africa.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2017
    Article
  4. Article
  5. Article
  6. Validation for clinical use of a novel HIV-2 plasma RNA viral load assay using the Abbott m2000 platform.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2012
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Geoffrey S GottliebDepartment of Medicine, School of Medicine, University of Washington, Seattle, Washington 98195, USA. gottlieb@u.washington.edu
Stephen E Hawes
Kim G Wong
Dana N Raugi
Habibatou D Agne
Cathy W Critchlow
Nancy B Kiviat
Papa Salif Sow
University of Washington · USCheikh Anta Diop University · SN

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI MARI M KITAHATA · 1988 to 2026
$104.9M
Antiretroviral Therapy for HIV-2 Infection in SenegalR01AI060466 · NIAID · UNIVERSITY OF WASHINGTON · PI GOTTLIEB, GEOFFREY SCOTT · 2005 to 2014
$6.5M
Epidemiology of HIV-1/HIV-2 Dual InfectionK08AI049755 · NIAID · UNIVERSITY OF WASHINGTON · PI GOTTLIEB, GEOFFREY SCOTT · 2001 to 2005
$580k
NIAID NIH HHS K08 AI049755NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI060466
6 · The paper itself

Abstract

Unique viral variants and resistance mutations may occur in the genital tract of HIV-2 ARV-naive infected women. We sequenced and phylogenetically analyzed protease (PR), reverse transcriptase (RT), and envelope (ENV) from PBMC and genital tract samples from four ARV-naive women in Senegal. HIV-2 protease polymorphisms that predict HIV-1 protease inhibitor (PI) resistance were common. Two subjects had protease mutations (T77I and I64V) in genital tract samples that were not found in PBMCs. One subject had the HIV-2 reverse transcriptase M184I mutation in CVL DNA (but not PBMCs) that is known to confer 3TC/FTC resistance in HIV-2. In another subject, the reverse transcriptase A62V mutation was also found in CVL-RNA but not PBMCs. We found no significant difference in ENV variants between PBMCs and the genital tract. HIV-2 RT and PR mutations in the genital tract of ARV-naive females may have implications for transmitted HIV-2 resistance and ARV therapy.

Indexed as

AdultAmino Acid SequenceAnti-HIV AgentsCervix UteriDrug Resistance, Viralenv Gene Products, Human Immunodeficiency VirusFemaleHIV-2HIV InfectionsHIV ProteaseHIV Reverse TranscriptaseHumansLeukocytes, MononuclearLikelihood FunctionsMiddle AgedMolecular Sequence DataAnti-HIV Agentsenv Gene Products, Human Immunodeficiency VirusHIV ProteaseHIV Reverse Transcriptasep16 protease, Human immunodeficiency virus 2reverse transcriptase, Human immunodeficiency virus 2RNA, Viral

Identifiers

PMID18544024
PMCPMC2927038
OpenAlexW2087146894

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.