Evidence map›Paper›PMID 18540073›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2008

Expression, purification, crystallization and structure determination of two glutathione S-transferase-like proteins from Shewanella oneidensis.

Bert Remmerie, Karen Vandenbroucke, Lina De Smet, Wesley Carpentier, Dirk De Vos, Jan Stout, Jozef Van Beeumen, Savvas N Savvides

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Crystallization and preliminary X-ray analysis of glutathione transferases from cyanobacteria.Acta crystallographica. Section F, Structural biology and crystallization communications · 2009
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Bert RemmerieLaboratory for Protein Biochemistry and Biomolecular Engineering (L-ProBE), K. L. Ledeganckstraat, Ghent University, B-9000 Ghent, Belgium.
Karen Vandenbroucke
Lina De Smet
Wesley Carpentier
Dirk De Vos
Jan Stout
Jozef Van Beeumen
Savvas N Savvides
Ghent University · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome analysis of Shewanella oneidensis, a Gram-negative bacterium with an unusual repertoire of respiratory and redox capabilities, revealed the presence of six glutathione S-transferase-like genes (sogst1-sogst6). Glutathione S-transferases (GSTs; EC 2.5.1.18) are found in all kingdoms of life and are involved in phase II detoxification processes by catalyzing the nucleophilic attack of reduced glutathione on diverse electrophilic substrates, thereby decreasing their reactivity. Structure-function studies of prokaryotic GST-like proteins are surprisingly underrepresented in the scientific literature when compared with eukaryotic GSTs. Here, the production and purification of recombinant SoGST3 (SO_1576) and SoGST6 (SO_4697), two of the six GST-like proteins in S. oneidensis, are reported and preliminary crystallographic studies of crystals of the recombinant enzymes are presented. SoGST3 was crystallized in two different crystal forms in the presence of GSH and DTT that diffracted to high resolution: a primitive trigonal form in space group P3(1) that exhibited merohedral twinning with a high twin fraction and a primitive monoclinic form in space group P2(1). SoGST6 yielded primitive orthorhombic crystals in space group P2(1)2(1)2(1) from which diffraction data could be collected to medium resolution after application of cryo-annealing protocols. Crystal structures of both SoGST3 and SoGST6 have been determined based on marginal search models by maximum-likelihood molecular replacement as implemented in the program Phaser.

Indexed as

Amino Acid SequenceBacterial ProteinsCloning, MolecularCrystallizationEscherichia coliGlutathioneGlutathione TransferaseModels, MolecularMolecular Sequence DataMolecular WeightNucleic Acid Amplification TechniquesPlasmidsRecombinant ProteinsSequence Homology, Amino AcidShewanellaX-Ray DiffractionBacterial ProteinsGlutathioneGlutathione TransferaseRecombinant Proteins

Identifiers

PMID18540073
PMCPMC2496851
OpenAlexW2025013619

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.