Evidence map›Paper›PMID 18540062›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2008

Crystallization and preliminary X-ray diffraction analysis of the carbohydrate-recognizing domain (VP8*) of bovine rotavirus strain NCDV.

Xing Yu, Annabel Guillon, Alex J Szyczew, Milton J Kiefel, Barbara S Coulson, Mark von Itzstein, Helen Blanchard

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xing YuInstitute for Glycomics, Gold Coast Campus, Griffith University, Queensland 4222, Australia.
Annabel Guillon
Alex J Szyczew
Milton J Kiefel
Barbara S Coulson
Mark von Itzstein
Helen Blanchard

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The infectivity of rotavirus is dramatically enhanced by proteolytic cleavage of its outer layer VP4 spike protein into two functional domains, VP8* and VP5*. The carbohydrate-recognizing domain VP8* is proposed to bind sialic acid-containing host cell-surface glycans and this is followed by a series of subsequent virus-cell interactions. Live attenuated human and bovine rotavirus vaccine candidates for the prevention of gastroenteritis have been derived from bovine rotavirus strain NCDV. The NCDV VP8*(64-224) was overexpressed, purified to homogeneity and crystallized in the presence of an N-acetylneuraminic acid derivative. X-ray diffraction data were collected to a resolution of 2.0 A and the crystallographic structure of NCDV VP8*(64-224) was determined by molecular replacement.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsCarbohydratesCattleCrystallizationEscherichia coliMolecular Sequence DataProtein Structure, TertiaryRNA-Binding ProteinsRotavirusThreonineTransformation, GeneticViral Nonstructural ProteinsX-Ray DiffractionCarbohydratesNS35 protein, rotavirusRNA-Binding ProteinsThreonineViral Nonstructural Proteins

Identifiers

PMID18540062
PMCPMC2496849

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.