Evidence map›Paper›PMID 18539740›Full record

ArticleJournal of bacteriology2008

ATPase activity and oligomeric state of TrwK, the VirB4 homologue of the plasmid R388 type IV secretion system.

Ignacio Arechaga, Alejandro Peña, Sandra Zunzunegui, María del Carmen Fernández-Alonso, Germán Rivas, Fernando de la Cruz

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Membrane association and polar localization of theProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Bacteria-Killing Type IV Secretion Systems.Frontiers in microbiology · 2019
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Structural organisation of the type IV secretion systems.Current opinion in microbiology · 2014
    Review
  16. Article
  17. Article
  18. Article
  19. Structure of the VirB4 ATPase, alone and bound to the core complex of a type IV secretion system.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Ignacio ArechagaDepartamento de Biología Molecular, Facultad de Medicina, Universidad de Cantabria and Instituto de Biomedicina y Biotecnología de Cantabria, IBBTEC, CSIC-UC-IDICAN, Santander, Spain. arechagai@unican.es
Alejandro Peña
Sandra Zunzunegui
María del Carmen Fernández-Alonso
Germán Rivas
Fernando de la Cruz
Universidad de Cantabria · ESCentro de Investigaciones Biológicas Margarita Salas · ESInstituto de Biomedicina y Biotecnología de Cantabria · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type IV secretion systems (T4SS) mediate the transfer of DNA and protein substrates to target cells. TrwK, encoded by the conjugative plasmid R388, is a member of the VirB4 family, comprising the largest and most conserved proteins of T4SS. VirB4 was suggested to be an ATPase involved in energizing pilus assembly and substrate transport. However, conflicting experimental evidence concerning VirB4 ATP hydrolase activity was reported. Here, we demonstrate that TrwK is able to hydrolyze ATP in vitro in the absence of its potential macromolecular substrates and other T4SS components. The kinetic parameters of its ATPase activity have been characterized. The TrwK oligomerization state was investigated by analytical ultracentrifugation and electron microscopy, and its effects on ATPase activity were analyzed. The results suggest that the hexameric form of TrwK is the catalytically active state, much like the structurally related protein TrwB, the conjugative coupling protein.

Indexed as

PlasmidsAdenosine TriphosphatasesAdenosine TriphosphateBacterial ProteinsConjugation, GeneticImage Processing, Computer-AssistedKineticsMacromolecular SubstancesMembrane Transport ProteinsMicroscopy, ElectronSequence Homology, Amino AcidUltracentrifugationAdenosine TriphosphatasesAdenosine TriphosphateBacterial ProteinsMacromolecular SubstancesMembrane Transport Proteins

Identifiers

PMID18539740
PMCPMC2493248
OpenAlexW2119652312

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.