Evidence map›Paper›PMID 18538591›Full record

ArticleImmunity2008

pH-dependent interdomain tethers of CD1b regulate its antigen capture.

Miguel Relloso, Tan-Yun Cheng, Jin S Im, Emilio Parisini, Carme Roura-Mir, Charles DeBono, Dirk M Zajonc, Leonel F Murga, Mary Jo Ondrechen, Ian A Wilson and 2 more

Abstract read
In one paragraph

Article in Immunity, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. A TCR β-Chain Motif Biases toward Recognition of Human CD1 Proteins.Journal of immunology (Baltimore, Md. : 1950) · 2019
    Article
  6. Review
  7. Molecular recognition of microbial lipid-based antigens by T cells.Cellular and molecular life sciences : CMLS · 2018
    Review
  8. Article
  9. Article
  10. Four pathways of CD1 antigen presentation to T cells.Current opinion in immunology · 2017
    Review
  11. Review
  12. Review
  13. Lipid and small-molecule display by CD1 and MR1.Nature reviews. Immunology · 2015
    Review
  14. Review
  15. Review
  16. Review
  17. The CD1 size problem: lipid antigens, ligands, and scaffolds.Cellular and molecular life sciences : CMLS · 2014
    Review
  18. Lipid antigens in immunity.Biological chemistry · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Miguel RellosoDivision of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital and Harvard Medical School, Smith Building Room 514, 1 Jimmy Fund Way, Boston, MA 02115, USA.
Tan-Yun Cheng
Jin S Im
Emilio Parisini
Carme Roura-Mir
Charles DeBono
Dirk M Zajonc
Leonel F Murga
Mary Jo Ondrechen
Ian A Wilson
Steven A Porcelli
D Branch Moody

Funding

Structural Basis of Immune Recognition of Glycosylated AntigensU54GM062116 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ALVAREZ, RICHARD · 2001 to 2010
$80.3M
"The Tuberculous Granuloma"P01AI063537 · NIAID · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI CHAN, JOHN R. · 2005 to 2015
$15.7M
T cell response to CDI-restricted lipids in tuberculosisR01AI049313 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH · 2001 to 2025
$10.6M
CD1 Presentation of Self Lipids to Human T CellsR01AR048632 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH · 2002 to 2024
$9.4M
Precision Targeting of CD1-Restricted iNKT Cells for Cancer ImmunotherapyR01AI045889 · NIAID · YESHIVA UNIVERSITY · PI Steven A Porcelli · 1999 to 2026
$9.3M
STRUCTURAL IMMUNOLOGY OF MOUSE MHC CLASS IR01CA058896 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 1994 to 2010
$3.9M
Remodeling of the M. tuberculosis cell wall during infectionR01AI071155 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH · 2006 to 2010
$2.1M
CD1 autoreactive T cells in human inflammatory skin diseaseR37AR048632 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI DAVID Branch MOODY · 2025 to 2026
$1.1M
NCI NIH HHS CA58896NCI NIH HHS R01 CA058896NIAID NIH HHS AI063537NIAID NIH HHS AI 071155NIAID NIH HHS AI45889NIAID NIH HHS P01 AI063537NIAID NIH HHS R01 AI045889NIAID NIH HHS R01 AI049313NIAID NIH HHS R01 AI071155NIAMS NIH HHS AR048632NIAMS NIH HHS R01 AR048632NIAMS NIH HHS R37 AR048632NIGMS NIH HHS GM62116NIGMS NIH HHS U54 GM062116
6 · The paper itself

Abstract

As CD1 proteins recycle between the cell surface and endosomes, they show altered receptiveness to lipid antigen loading. We hypothesized that changes in proton concentration encountered within distinct endosomal compartments influence the charge state of residues near the entrance to the CD1 groove and thereby control antigen loading. Molecular dynamic models identified flexible areas of the CD1b heavy chain in the superior and lateral walls of the A' pocket. In these same areas, residues that carry charge in a pH-dependent manner (D60, E62) were found to tether the rigid alpha1 helix to flexible areas of the alpha2 helix and the 50-60 loop. After disruption of these tethers with acid pH or mutation, we observed increased association and dissociation of lipids with CD1b and preferential presentation of antigens with bulky lipid tails. We propose that ionic tethers act as molecular switches that respond to pH fluxes during endosomal recycling and regulate the conformation of the CD1 heavy chain to control the size and rate of antigens captured.

Indexed as

Antigen PresentationAntigensAntigens, CD1Cell LineEndosomesHumansHydrogen-Ion ConcentrationLipidsMutant ProteinsProtein ConformationProtein Structure, TertiaryAntigensAntigens, CD1CD1b antigenLipidsMutant Proteins

Identifiers

PMID18538591
PMCPMC2753602

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.