Evidence map›Paper›PMID 18537119›Full record

ArticleMolecular reproduction and development2009

Regulation of the Nanog gene by both positive and negative cis-regulatory elements in embryonal carcinoma cells and embryonic stem cells.

Brian Boer, Jesse L Cox, David Claassen, Sunil Kumar Mallanna, Michelle Desler, Angie Rizzino

Open access · greenAbstract readComparative Study
In one paragraph

Article in Molecular reproduction and development, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
  3. Zfp281 mediates Nanog autorepression through recruitment of the NuRD complex and inhibits somatic cell reprogramming.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  4. Expression of the stem cell marker, Nanog, in human endometrial adenocarcinoma.International journal of gynecological pathology : official journal of the International Society of Gynecological Pathologists · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Brian BoerEppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha, Nebraska 68198-6805, USA.
Jesse L Cox
David Claassen
Sunil Kumar Mallanna
Michelle Desler
Angie Rizzino
University of Nebraska Medical Center · US

Funding

UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Steven H Caplan · 1985 to 2026
$55.0M
CHEMICAL CARCINOGENESIS &CANCER BIOLOGYT32CA009476 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Jennifer D. Black · 1988 to 2026
$6.2M
Regulation of Growth Factors and EmbryogenesisR01GM080751 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI RIZZINO, A. ANGIE · 2007 to 2010
$1.2M
NCI NIH HHS CA 009476NCI NIH HHS CA 36727NCI NIH HHS P30 CA036727NCI NIH HHS T32 CA009476NIGMS NIH HHS GM 080751NIGMS NIH HHS R01 GM080751
6 · The paper itself

Abstract

The transcription factor Nanog is essential for mammalian embryogenesis, as well as the pluripotency of embryonic stem (ES) cells. Work with ES cells and embryonal carcinoma (EC) cells previously identified positive and negative cis-regulatory elements that influence the activity of the Nanog promoter, including adjacent cis-regulatory elements that bind Sox2 and Oct-3/4. Given the importance of Nanog during mammalian development, we examined the cis-regulatory elements required for Nanog promoter activity more closely. In this study, we demonstrate that two positive cis-regulatory elements previously shown to be active in F9 EC cells are also active in ES cells. We also identify a novel negative regulatory region that is located in close proximity to two other positive Nanog cis-regulatory elements. Although this negative regulatory region is active in F9 EC cells and ES cells, it is inactive in P19 EC cells. Furthermore, we demonstrate that one of the positive cis-regulatory elements active in F9 EC cells and ES cells is inactive in P19 EC cells. Together, these and other studies suggest that Nanog transcription is regulated by the interplay of positive and negative cis-regulatory elements. Given that P19 appears to be more closely related to a later developmental stage of mammalian development than F9 and ES cells, differential utilization of cis-regulatory elements may reflect mechanisms used during development to achieve the correct level of Nanog expression as embryogenesis unfolds.

Indexed as

AnimalsBase SequenceBlotting, NorthernCell Line, TumorDNA PrimersEmbryonic Stem CellsGene Expression RegulationHomeodomain ProteinsMiceMolecular Sequence DataNanog Homeobox ProteinPromoter Regions, GeneticRegulatory Elements, TranscriptionalDNA PrimersHomeodomain ProteinsNanog Homeobox ProteinNanog protein, mouse

Identifiers

PMID18537119
PMCPMC2614456
OpenAlexW2032630038

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.