Evidence map›Paper›PMID 18536725›Full record

ArticleNature structural & molecular biology2008

Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT.

Christopher R Booth, Anne S Meyer, Yao Cong, Maya Topf, Andrej Sali, Steven J Ludtke, Wah Chiu, Judith Frydman

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. The TRiCky Business of Protein Folding in Health and Disease.Frontiers in cell and developmental biology · 2022
    Review
  10. Article
  11. An ensemble of cryo-EM structures of TRiC reveal its conformational landscape and subunit specificity.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Single-Ring Intermediates Are Essential for Some Chaperonins.Frontiers in molecular biosciences · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. The Mechanism and Function of Group II Chaperonins.Journal of molecular biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Christopher R BoothGraduate Program in Structural and Computational Biology and Molecular Biophysics, One Baylor Plaza, Baylor College of Medicine, Houston, Texas 77030, USA.
Anne S Meyer
Yao Cong
Maya Topf
Andrej Sali
Steven J Ludtke
Wah Chiu
Judith Frydman
Baylor College of Medicine · USQB3 · USStanford University · US

Funding

ZERNIKE PHASE PLATE CRYOEM IN OKAZAKIP41RR002250 · NCRR · UNIVERSITY OF ARIZONA · PI JOACHIMIAK, ANDRZEJ · 1985 to 2011
$22.1M
Mechanism of the Eukaryotic Chaperonin TRiC/CCTR01GM074074 · NIGMS · STANFORD UNIVERSITY · PI FRYDMAN, JUDITH · 2005 to 2024
$6.8M
SUPPORT AND DEVELOPMENT OF EMAN FOR ELECTRON MICROSCOPY IMAGE PROCESSINGR01GM080139 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LUDTKE, STEVEN J · 2006 to 2022
$5.4M
Center for Protein Folding Machinery (RMI)PN1EY016525 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2004 to 2004
$67k
NCRR NIH HHS P41 RR002250NEI NIH HHS PN1 EY016525NIGMS NIH HHS R01 GM074074NIGMS NIH HHS R01 GM080139
6 · The paper itself

Abstract

All chaperonins mediate ATP-dependent polypeptide folding by confining substrates within a central chamber. Intriguingly, the eukaryotic chaperonin TRiC (also called CCT) uses a built-in lid to close the chamber, whereas prokaryotic chaperonins use a detachable lid. Here we determine the mechanism of lid closure in TRiC using single-particle cryo-EM and comparative protein modeling. Comparison of TRiC in its open, nucleotide-free, and closed, nucleotide-induced states reveals that the interdomain motions leading to lid closure in TRiC are radically different from those of prokaryotic chaperonins, despite their overall structural similarity. We propose that domain movements in TRiC are coordinated through unique interdomain contacts within each subunit and, further, these contacts are absent in prokaryotic chaperonins. Our findings show how different mechanical switches can evolve from a common structural framework through modification of allosteric networks.

Indexed as

AnimalsCattleChaperonin 60Chaperonin Containing TCP-1ChaperoninsCryoelectron MicroscopyCrystallography, X-RayModels, MolecularProtein Structure, SecondaryProtein Structure, TertiaryProtein SubunitsChaperonin 60Chaperonin Containing TCP-1ChaperoninsProtein Subunits

Identifiers

PMID18536725
PMCPMC2546500
OpenAlexW2161644830

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.