Evidence map›Paper›PMID 18534010›Full record

ArticleBMC genomics2008

Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium.

Lionel Frangeul, Philippe Quillardet, Anne-Marie Castets, Jean-François Humbert, Hans C P Matthijs, Diego Cortez, Andrew Tolonen, Cheng-Cai Zhang, Simonetta Gribaldo, Jan-Christoph Kehr and 10 more

Abstract read
In one paragraph

Article in BMC genomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed.

  1. Article
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  14. Review
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  16. Review
  17. Science advances · 2023
    Article
  18. Article
  19. Article
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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Lionel FrangeulInstitut Pasteur, Pasteur Genopole, F-75015, Paris, France. lfrangeu@pasteur.fr
Philippe Quillardet
Anne-Marie Castets
Jean-François Humbert
Hans C P Matthijs
Diego Cortez
Andrew Tolonen
Cheng-Cai Zhang
Simonetta Gribaldo
Jan-Christoph Kehr
Yvonne Zilliges
Nadine Ziemert
Sven Becker
Emmanuel Talla
Amel Latifi
Alain Billault
Anthony Lepelletier
Elke Dittmann
Christiane Bouchier
Nicole Tandeau de Marsac

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe colonial cyanobacterium Microcystis proliferates in a wide range of freshwater ecosystems and is exposed to changing environmental factors during its life cycle. Microcystis blooms are often toxic, potentially fatal to animals and humans, and may cause environmental problems. There has been little investigation of the genomics of these cyanobacteria.

resultsDeciphering the 5,172,804 bp sequence of Microcystis aeruginosa PCC 7806 has revealed the high plasticity of its genome: 11.7% DNA repeats containing more than 1,000 bases, 6.8% putative transposases and 21 putative restriction enzymes. Compared to the genomes of other cyanobacterial lineages, strain PCC 7806 contains a large number of atypical genes that may have been acquired by lateral transfers. Metabolic pathways, such as fermentation and a methionine salvage pathway, have been identified, as have genes for programmed cell death that may be related to the rapid disappearance of Microcystis blooms in nature. Analysis of the PCC 7806 genome also reveals striking novel biosynthetic features that might help to elucidate the ecological impact of secondary metabolites and lead to the discovery of novel metabolites for new biotechnological applications. M. aeruginosa and other large cyanobacterial genomes exhibit a rapid loss of synteny in contrast to other microbial genomes.

conclusionMicrocystis aeruginosa PCC 7806 appears to have adopted an evolutionary strategy relying on unusual genome plasticity to adapt to eutrophic freshwater ecosystems, a property shared by another strain of M. aeruginosa (NIES-843). Comparisons of the genomes of PCC 7806 and other cyanobacterial strains indicate that a similar strategy may have also been used by the marine strain Crocosphaera watsonii WH8501 to adapt to other ecological niches, such as oligotrophic open oceans.

Indexed as

Genome, BacterialAnimalsDNA, BacterialDNA, IntergenicDNA Restriction-Modification EnzymesDNA, RibosomalEcosystemEvolution, MolecularFresh WaterHumansMicrocystisMolecular Sequence DataMultigene FamilyPhylogenyRepetitive Sequences, Nucleic AcidSpecies SpecificityDNA, BacterialDNA, IntergenicDNA Restriction-Modification EnzymesDNA, Ribosomal

Identifiers

PMID18534010
PMCPMC2442094

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.