Evidence map›Paper›PMID 18525076›Full record

ArticleGlycobiology2008

Characteristics of carbohydrate antigen binding to the presentation protein HLA-DR.

Brian A Cobb, Dennis L Kasper

Open access · bronzeAbstract read
In one paragraph

Article in Glycobiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  8. Classical and novel strategies to develop aHuman vaccines & immunotherapeutics · 2019
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  10. The Gut Microbiome and Multiple Sclerosis.Cold Spring Harbor perspectives in medicine · 2018
    Review
  11. The influence of gut-derived CD39 regulatory T cells in CNS demyelinating disease.Translational research : the journal of laboratory and clinical medicine · 2017
    Review
  12. Review
  13. Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Brian A CobbDepartment of Pathology, Case Western Reserve University School of Medicine, Cleveland, OH, USA. brian.cobb@case.edu
Dennis L Kasper
Brigham and Women's Hospital · USCase Western Reserve University · US

Funding

INFECTIOUS DISEASE AND BASIC MICROBIOLOGICAL MECHANISMST32AI007061 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Marcia B Goldberg · 1985 to 2026
$12.1M
PATHOGENIC MECHANISMS OF ANAEROBES IN SEPSISR01AI039576 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI KASPER, DENNIS L. · 1997 to 2007
$2.4M
Biochemistry of Antigen Presentation MechanismsK22AI062707 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI COBB, BRIAN A · 2006 to 2007
$267k
PATHOGENIC MECHANISMS OF ANAEROBES IN SEPSISR21AI039576 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI KASPER, DENNIS L. · 1996 to 1996
–
NIAID NIH HHS AI039576NIAID NIH HHS AI062707NIAID NIH HHS K22 AI062707NIAID NIH HHS T32 AI007061
6 · The paper itself

Abstract

Zwitterionic polysaccharide antigens (ZPSs) were recently shown to activate T cells in a class II major histocompatibility complex (MHCII)-dependent fashion requiring antigen presenting cell (APC)-mediated oxidative processing although little is known about the mechanism or affinity of carbohydrate presentation (Cobb BA, Wang Q, Tzianabos AO, Kasper DL. 2004. Polysaccharide processing and presentation by the MHCII pathway. Cell. 117:677-687). A recent study showed that the helical conformation of ZPSs (Wang Y, Kalka-Moll WM, Roehrl MH, Kasper DL. 2000. Structural basis of the abscess-modulating polysaccharide A2 from Bacteroides fragilis. Proc Natl Acad Sci USA. 97:13478-13483; Choi YH, Roehrl MH, Kasper DL, Wang JY. 2002. A unique structural pattern shared by T-cell-activating and abscess-regulating zwitterionic polysaccharides. Biochemistry. 41:15144-15151) is closely linked with immunogenic activity (Tzianabos AO, Onderdonk AB, Rosner B, Cisneros RL, Kasper DL. 1993. Structural features of polysaccharides that induce intra-abdominal abscesses. Science. 262:416-419) and is stabilized by a zwitterionic charge motif (Kreisman LS, Friedman JH, Neaga A, Cobb BA. 2007. Structure and function relations with a T-cell-activating polysaccharide antigen using circular dichroism. Glycobiology. 17:46-55), suggesting a strong carbohydrate structure-function relationship. In this study, we show that PSA, the ZPS from Bacteroides fragilis, associates with MHCII at high affinity and 1:1 stoichiometry through a mechanism mirroring peptide presentation. Interestingly, PSA binding was mutually exclusive with common MHCII antigens and showed significant allelic differences in binding affinity. The antigen exchange factor HLA-DM that catalyzes peptide antigen association with MHCII also increased the rate of ZPS association and was required for APC presentation and ZPS-mediated T cell activation. Finally, the zwitterionic nature of these antigens was required only for MHCII binding, and not endocytosis, processing, or vesicular trafficking to MHCII-containing vesicles. This report is the first quantitative analysis of the binding mechanism of carbohydrate antigens with MHCII and leads to a novel model for nontraditional MHCII antigen presentation during bacterial infections.

Indexed as

Carbohydrate MetabolismAnimalsAntigen PresentationAntigen-Presenting CellsAntigens, BacterialBinding, CompetitiveCarbohydratesCHO CellsCricetinaeCricetulusHLA-D AntigensHLA-DR AntigensHumansHydrogen-Ion ConcentrationMiceMice, Inbred C57BLAntigens, BacterialCarbohydratesHLA-D AntigensHLA-DM antigensHLA-DR AntigensSalts

Identifiers

PMID18525076
PMCPMC2733769
OpenAlexW2162751837

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.