Evidence map›Paper›PMID 18524915›Full record

ArticleMicrobiology (Reading, England)2008

Membrane topology and roles of Pseudomonas aeruginosa Alg8 and Alg44 in alginate polymerization.

Lashanda L Oglesby, Sumita Jain, Dennis E Ohman

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 118 citations in OpenAlex.

  1. Advances in alginate biosynthesis: regulation and production inFrontiers in bioengineering and biotechnology · 2025
    Review
  2. Frontiers in cellular and infection microbiology · 2024
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Transcriptome Analysis ofAdvances and applications in bioinformatics and chemistry : AABC · 2021
    Article
  9. Cysteamine Inhibits Glycine Utilisation and Disrupts Virulence inFrontiers in cellular and infection microbiology · 2021
    Article
  10. Review
  11. Microorganisms · 2020
    Article
  12. Article
  13. Bacterial Biofilm Control by Perturbation of Bacterial Signaling Processes.International journal of molecular sciences · 2017
    Review
  14. Article
  15. Surface Sensing for Biofilm Formation inFrontiers in microbiology · 2017
    Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Lashanda L OglesbyMcGuire Veterans Affairs Medical Center, Richmond, VA 23249, USA.
Sumita JainMcGuire Veterans Affairs Medical Center, Richmond, VA 23249, USA.
Dennis E OhmanMcGuire Veterans Affairs Medical Center, Richmond, VA 23249, USA.
Virginia Commonwealth University Medical Center · US

Funding

GENETICS OF ALGINATE BIOSYNTHESIS IN P. AERUGINOSAR01AI019146 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI OHMAN, DENNIS EDWARD · 1985 to 2011
$2.7M
Activation of Alginate Genes in Pseudomonas aeruginosaR56AI019146 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI OHMAN, DENNIS EDWARD · 2006 to 2013
$682k
Pathogenic Mechanism for Lung Infection in Mucoid PseudomonasI01BX000477 · VA · VA VETERANS ADMINISTRATION HOSPITAL · PI OHMAN, DENNIS EDWARD, ZHOU, HUIPING · 2011 to 2025
–
BLRD VA I01 BX000477NIAID NIH HHS AI-19146NIAID NIH HHS R01 AI019146NIAID NIH HHS R56 AI019146
6 · The paper itself

Abstract

Mucoid strains of Pseudomonas aeruginosa that overproduce alginate are associated with chronic pulmonary disease (e.g. cystic fibrosis). Mutants defective in one of several periplasmic proteins (AlgKGX) for alginate secretion release alginate fragments due to the activity of an alginate lyase (AlgL) in the periplasm, which cleaves the newly formed polymers. However, mutants defective in Alg8 or Alg44 did not secrete polymer or alginate fragments, suggesting that both these membrane proteins have a role in the polymerization reaction. A model for the membrane topology of Alg8, a glycosyltransferase (GT), was constructed using PhoA fusions. This provided evidence for a large cytoplasmic loop containing the active domains predicted for beta-GTs such as Alg8 and five transmembrane (TM) domains, one of which resembles a cleavable signal peptide. The C-terminal TM domain of Alg8 was critical for the polymerization reaction in vivo. Alanine substitution mutagenesis showed that all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo, and two of these substitutions also affected Alg8 protein stability. A membrane topology model for Alg44 was also constructed using PhoA fusions, and this showed a central TM domain and predicted an N-terminal TM domain that may be a membrane anchor. An N-terminal PilZ domain in Alg44 for c-di-GMP [bis-(3',5')-cyclic dimeric GMP] binding, which is required for alginate synthesis, was localized to the cytoplasmic loop. The long periplasmic C terminus of Alg44 contains a region similar to membrane fusion proteins (MFPs) of multi-drug efflux systems, which predicts the possibility of its interaction with another protein in this compartment. A Western blot analysis of the outer-membrane porin AlgE showed reduced AlgE levels in the alg44 mutant, whereas expression of Alg44 in trans restored AlgE within the cell. C-terminal truncations of Alg44 as small as 24 amino acids blocked alginate polymerization in vivo, indicating a critical role for the MFP domain. These studies suggest that Alg44 may act as a co-polymerase in concert with Alg8, the major GT, and that both inner-membrane proteins are required in vivo for the polymerization reaction leading to alginate production.

Indexed as

AlginatesAlkaline PhosphataseBacterial ProteinsCell MembraneEscherichia coliGlucuronic AcidHexuronic AcidsMembrane ProteinsPolymersPorinsPseudomonas aeruginosaRecombinant Fusion ProteinsSequence Homology, Amino AcidAlg44 protein, Pseudomonas aeruginosaAlg8 protein, Pseudomonas aeruginosaAlginatesAlkaline PhosphataseBacterial ProteinsGlucuronic AcidHexuronic AcidsMembrane ProteinsPolymersPorinsRecombinant Fusion Proteins

Identifiers

PMID18524915
PMCPMC2650845
OpenAlexW2169615907

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.