Evidence map›Paper›PMID 18524831›Full record

ArticleJournal of virology2008

Competition model for upregulation of the major histocompatibility complex class II-associated invariant chain by human immunodeficiency virus type 1 Nef.

Richard S Mitchell, Rittik Chaudhuri, O Wolf Lindwasser, Kristie A Tanaka, David Lau, Rudy Murillo, Juan S Bonifacino, John C Guatelli

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Disruption of the murine Ap2β1 gene causes nonsyndromic cleft palate.The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association · 2010
    Article
  5. Article
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  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Richard S MitchellDepartment of Medicine,1 Division of Biology, University of California, San Diego, La Jolla, CA 92093-0679, USA. rsmitchell@ucsd.edu
Rittik Chaudhuri
O Wolf Lindwasser
Kristie A Tanaka
David Lau
Rudy Murillo
Juan S Bonifacino
John C Guatelli
National Institutes of Health · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USUniversity of California, San Diego · USVA San Diego Healthcare System · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
HOPE Training GrantT32AI007384 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Sara Gianella Weibel, Scott L Letendre · 1990 to 2026
$9.7M
HIV-1 NEF AND VIRAL INFECTIVITYR01AI038201 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN C. · 1996 to 2013
$4.1M
HIV 1 NEF and InfectivityR21AI038201 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN · 2003 to 2003
$331k
Mechanisms of CD4 downregulation by primate immunodeficiency virusesZIAHD008834 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI BONIFACINO, JUAN · 2010 to 2010
$0k
Intramural NIH HHSNIAID NIH HHS AI07384NIAID NIH HHS AI 36214NIAID NIH HHS AI36214NIAID NIH HHS AI38201NIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI038201NIAID NIH HHS R21 AI038201NIAID NIH HHS T32 AI007384
6 · The paper itself

Abstract

The human immunodeficiency virus type 1 (HIV-1) Nef protein upregulates the expression of the invariant chain (Ii)/major histocompatibility complex class II (MHC-II) complex at the cell surface. This complex appears to reach the antigen-loading endosomal compartment at least in part via an indirect pathway in which it is internalized from the cell surface via the adaptor protein 2 (AP-2) complex. Here we provide evidence for a competition model to explain how Nef upregulates the expression of Ii at the cell surface. In this model, Nef and Ii compete for binding to AP-2. In support of this model, Nef decreased the rate of internalization of Ii from the cell surface. The AP-binding dileucine motif in Nef, ENTSLL(165), was necessary and sufficient for the upregulation of Ii. In addition, two leucine-based AP-binding motifs in the Ii cytoplasmic tail, DDQRDLI(8) and EQLPML(17), were critical for the efficient upregulation of Ii by Nef. Experiments using Nef variants in which the native dileucine-based sorting motif was replaced with similar motifs from cellular transmembrane proteins allowed modulation of AP-binding specificity. Analysis of these variants suggested that the binding of Nef to AP-2 is sufficient to upregulate Ii at the plasma membrane. Finally, interference with the expression of AP-2 caused an upregulation of Ii at the plasma membrane, and this decreased the effect of Nef. These data indicate that Nef usurps AP-2 complexes to dysregulate Ii trafficking and potentially interfere with antigen presentation in the context of MHC-II.

Indexed as

Gene Expression Regulation, ViralAdaptor Protein Complex 2Amino Acid MotifsAntigen PresentationBinding, CompetitiveCD4-Positive T-LymphocytesCell MembraneCytoplasmGene Products, nefHeLa CellsHistocompatibility Antigens Class IIHumansLeucineLeukocytes, MononuclearModels, BiologicalAdaptor Protein Complex 2Gene Products, nefHistocompatibility Antigens Class IILeucine

Identifiers

PMID18524831
PMCPMC2519569
OpenAlexW2128554645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.