Evidence map›Paper›PMID 18524770›Full record

ArticleThe Journal of biological chemistry2008

Oligomerization of BAK by p53 utilizes conserved residues of the p53 DNA binding domain.

E Christine Pietsch, Erin Perchiniak, Adrian A Canutescu, Guoli Wang, Roland L Dunbrack, Maureen E Murphy

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. The ARTS of p53-dependent mitochondrial apoptosis.Journal of molecular cell biology · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Tumor suppressor p53: Biology, signaling pathways, and therapeutic targeting.Biochimica et biophysica acta. Reviews on cancer · 2021
    Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

E Christine PietschDivision of Medical Sciences and Program in Biomolecular Structure and Function, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.
Erin Perchiniak
Adrian A Canutescu
Guoli Wang
Roland L Dunbrack
Maureen E Murphy
Fox Chase Cancer Center · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
TRAINING PROGRAM IN CANCER RESEARCHT32CA009035 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI CHERNOFF, JONATHAN · 1985 to 2020
$10.5M
Functional Analysis of p53 Polymorphic Variants - Diversity SupplementR01CA102184 · NCI · WISTAR INSTITUTE · PI Maureen E. Murphy · 2005 to 2026
$7.4M
Modeling of Protein Complexes and Missense MutationsR01GM073784 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI DUNBRACK, ROLAND L · 2006 to 2009
$1.2M
MDR1 Transcription - Regulation by ChromatinF32CA110713 · NCI · FOX CHASE CANCER CENTER · PI PIETSCH, EVA C · 2004 to 2005
$83k
NCI NIH HHS F32 CA 110713NCI NIH HHS F32 CA110713NCI NIH HHS P30 CA 006297NCI NIH HHS P30 CA006927NCI NIH HHS R01 CA 102184NCI NIH HHS R01 CA102184NCI NIH HHS T32 CA 009035NCI NIH HHS T32 CA009035NIGMS NIH HHS R01 GM073784NIGMS NIH HHS R01 GM 73784
6 · The paper itself

Abstract

Genotoxic stress triggers a rapid translocation of p53 to the mitochondria, contributing to apoptosis in a transcription-independent manner. Using immunopurification protocols and mass spectrometry, we previously identified the proapoptotic protein BAK as a mitochondrial p53-binding protein and showed that recombinant p53 directly binds to BAK and can induce its oligomerization, leading to cytochrome c release. In this work we describe a combination of molecular modeling, electrostatic analysis, and site-directed mutagenesis to define contact residues between BAK and p53. Our data indicate that three regions within the core DNA binding domain of p53 make contact with BAK; these are the conserved H2 alpha-helix and the L1 and L3 loop. Notably, point mutations in these regions markedly impair the ability of p53 to oligomerize BAK and to induce transcription-independent cell death. We present a model whereby positively charged residues within the H2 helix and L1 loop of p53 interact with an electronegative domain on the N-terminal alpha-helix of BAK; the latter is known to undergo conformational changes upon BAK activation. We show that mutation of acidic residues in the N-terminal helix impair the ability of BAK to bind to p53. Interestingly, many of the p53 contact residues predicted by our model are also direct DNA contact residues, suggesting that p53 interacts with BAK in a manner analogous to DNA. The combined data point to the H2 helix and L1 and L3 loops of p53 as novel functional domains contributing to transcription-independent apoptosis by this tumor suppressor protein.

Indexed as

AnimalsApoptosisbcl-2 Homologous Antagonist-Killer ProteinCaenorhabditis elegansCell Line, TumorFibroblastsHumansMiceMitochondriaModels, BiologicalMutagenesis, Site-DirectedProtein BindingProtein ConformationProtein Structure, TertiaryTumor Suppressor Protein p53BAK1 protein, humanbcl-2 Homologous Antagonist-Killer ProteinTumor Suppressor Protein p53

Identifiers

PMID18524770
PMCPMC2475706
OpenAlexW2013669579

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.