Evidence map›Paper›PMID 18524659›Full record

ArticleMolecular genetics and metabolism2008

Complex management of a patient with a contiguous Xp11.4 gene deletion involving ornithine transcarbamylase: a role for detailed molecular analysis in complex presentations of classical diseases.

Matthew A Deardorff, Himabindu Gaddipati, Paige Kaplan, Pedro A Sanchez-Lara, Neal Sondheimer, Nancy B Spinner, Hakon Hakonarson, Can Ficicioglu, Jaya Ganesh, Thomas Markello and 4 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Molecular genetics and metabolism, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. NADPH Oxidase Deficiency: A Multisystem Approach.Oxidative medicine and cellular longevity · 2017
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Contiguous Xp11.4 Gene Deletion Leading to Ornithine Transcarbamylase Deficiency Detected by High-density Single-nucleotide Array.Clinical pediatric endocrinology : case reports and clinical investigations : official journal of the Japanese Society for Pediatric Endocrinology · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Matthew A DeardorffDivision of Metabolic Diseases, The Children's Hospital of Philadelphia, Philadelphia, PA, USA; Division of Human Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Himabindu GaddipatiDivision of Metabolic Diseases, The Children's Hospital of Philadelphia, Philadelphia, PA, USA; Division of Human Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Paige KaplanDivision of Metabolic Diseases, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Pedro A Sanchez-LaraDivision of Metabolic Diseases, The Children's Hospital of Philadelphia, Philadelphia, PA, USA; Division of Human Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Neal SondheimerDivision of Metabolic Diseases, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Nancy B SpinnerDivision of Human Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Hakon HakonarsonDivision of Human Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA; Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Can FiciciogluDivision of Metabolic Diseases, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Jaya GaneshDivision of Metabolic Diseases, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Thomas MarkelloDivision of Genetics and Metabolism, Children's National Medical Center, 111 Michigan Avenue, NW, Washington, DC 20010, USA.
Brett LoecheltDivision of Stem Cell Transplantation & Immunology, Children's National Medical Center, Washington, DC, USA.
Dina J ZandDivision of Genetics and Metabolism, Children's National Medical Center, 111 Michigan Avenue, NW, Washington, DC 20010, USA.
Marc YudkoffDivision of Metabolic Diseases, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Uta Lichter-KoneckiDivision of Genetics and Metabolism, Children's National Medical Center, 111 Michigan Avenue, NW, Washington, DC 20010, USA.
Children's Hospital of Philadelphia · USChildren's National · US

Funding

Training (Career Development) ComponentU54HD061221 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI NAGAMANI, SANDESH CHAKRAVARTHY SREENATH · 2009 to 2023
$20.8M
Molecular Analysis of Human Subtelomeric RearrangementsP50HL074731 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI CNAAN, AVITAL · 2004 to 2008
$19.2M
ZIDOVUDINE VS 2',3'DIDEHYDRO-3'DEOXYTHYMIDINE IN CHILDRENM01RR000240 · NCRR · CHILDREN'S HOSP OF PHILADELPHIA · PI ALTSCHULER, STEVEN M · 1985 to 2006
$15.3M
RARE DISEASES CRC: UREA CYCLE DISORDERSU54RR019453 · NCRR · CHILDREN'S RESEARCH INSTITUTE · PI BATSHAW, MARK L. · 2003 to 2008
$7.0M
The Cohesin Complex and Cornelia de Lange SyndromeK08HD055488 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI DEARDORFF, MATTHEW A · 2007 to 2011
$685k
NCRR NIH HHS 2M01RR000240NCRR NIH HHS 5U54RR019453NCRR NIH HHS M01 RR000240NCRR NIH HHS U54 RR019453NHLBI NIH HHS HL074731NHLBI NIH HHS P50 HL074731NICHD NIH HHS K08 HD055488NICHD NIH HHS U54 HD061221
6 · The paper itself

Abstract

A male infant was diagnosed prenatally with a partial ornithine transcarbamylase (OTC) gene deletion and managed from birth. However, he displayed neurological abnormalities and developed pleural effusions, ascites and anasarca not solely explained by OTC deficiency (OTCD). Further evaluation of the gene locus using exon-specific PCR and high-density SNP array copy number analysis revealed a 3.9-Mb deletion from Xp11.4 to Xp21.1 including five additional gene deletions, three causing the known genetic diseases: Retinitis pigmentosa (RP3), X-linked chronic granulomatous disease (CGD) and McLeod syndrome. The case illustrates (1) the complexities of managing a patient with neonatal onset OTCD, CGD, RP3 and McLeod syndrome, (2) the need for detailed evaluation in seemingly "isolated" gene deletions and (3) the clinical utility of high-density copy number analysis for rapidly characterizing chromosomal lesions.

Indexed as

Gene DeletionChromosome MappingChromosomes, Human, XFatal OutcomeGenetic Diseases, X-LinkedGranulomatous Disease, ChronicHumansInfantMaleOrnithine CarbamoyltransferaseOrnithine Carbamoyltransferase Deficiency DiseaseRetinitis PigmentosaOrnithine Carbamoyltransferase

Identifiers

PMID18524659
PMCPMC2572572
OpenAlexW1966846106

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.