Evidence map›Paper›PMID 18521075›Full record

ReviewNature reviews. Microbiology2008

Advances in bacterial promoter recognition and its control by factors that do not bind DNA.

Shanil P Haugen, Wilma Ross, Richard L Gourse

Abstract readReview
In one paragraph

Review in Nature reviews. Microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 186 papers.

0numbers the graph read from it
0cells of the map it votes in
186citing papers in PubMed
14.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

186 citing papers in PubMed, 309 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Molecular turn inEmerging microbes & infections · 2025
    Article
  7. Article
  8. Transcription activation inEcoSal Plus · 2024
    Review
  9. Review
  10. Review
  11. Review
  12. Mutations upstream fromJournal of bacteriology · 2024
    Article
  13. Nucleotides as Bacterial Second Messengers.Molecules (Basel, Switzerland) · 2023
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Structural origins ofProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Article

126 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Shanil P HaugenDepartment of Bacteriology, University of Wisconsin- Madison, 1550 Linden Drive, Madison, Wisconsin 53706, USA.
Wilma Ross
Richard L Gourse
University of Wisconsin–Madison · US

Funding

Mechanism, Activation, and Control of rRNA TranscriptionR37GM037048 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GOURSE, RICHARD L. · 2007 to 2016
$6.6M
NIGMS NIH HHS R37 GM037048NIGMS NIH HHS R37 GM37048
6 · The paper itself

Abstract

Early work identified two promoter regions, the -10 and -35 elements, that interact sequence specifically with bacterial RNA polymerase (RNAP). However, we now know that several additional promoter elements contact RNAP and influence transcription initiation. Furthermore, our picture of promoter control has evolved beyond one in which regulation results solely from activators and repressors that bind to DNA sequences near the RNAP binding site: many important transcription factors bind directly to RNAP without binding to DNA. These factors can target promoters by affecting specific kinetic steps on the pathway to open complex formation, thereby regulating RNA output from specific promoters.

Indexed as

Bacterial ProteinsDNADNA-Directed RNA PolymerasesGene Expression Regulation, BacterialPromoter Regions, GeneticTranscription FactorsTranscription, GeneticBacterial ProteinsDNADNA-Directed RNA PolymerasesTranscription Factors

Identifiers

PMID18521075
PMCPMC3700611
OpenAlexW2036758334

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.