Evidence map›Paper›PMID 18515840›Full record

ArticleNucleic acids research2008

BIOSMILE web search: a web application for annotating biomedical entities and relations.

Hong-Jie Dai, Chi-Hsin Huang, Ryan T K Lin, Richard Tzong-Han Tsai, Wen-Lian Hsu

Abstract read
In one paragraph

Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. BioC interoperability track overview.Database : the journal of biological databases and curation · 2014
    Review
  4. eFIP: a tool for mining functional impact of phosphorylation from literature.Methods in molecular biology (Clifton, N.J.) · 2011
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hong-Jie DaiInstitute of Information Science, Academia Sinica, Department of Computer Science, National Tsing-Hua University, Hsinchu, Taiwan, R.O.C.
Chi-Hsin Huang
Ryan T K Lin
Richard Tzong-Han Tsai
Wen-Lian Hsu

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BIOSMILE web search (BWS), a web-based NCBI-PubMed search application, which can analyze articles for selected biomedical verbs and give users relational information, such as subject, object, location, manner, time, etc. After receiving keyword query input, BWS retrieves matching PubMed abstracts and lists them along with snippets by order of relevancy to protein-protein interaction. Users can then select articles for further analysis, and BWS will find and mark up biomedical relations in the text. The analysis results can be viewed in the abstract text or in table form. To date, BWS has been field tested by over 30 biologists and questionnaires have shown that subjects are highly satisfied with its capabilities and usability. BWS is accessible free of charge at http://bioservices.cse.yzu.edu.tw/BWS.

Indexed as

Protein Interaction MappingPubMedSoftwareGenesInternetUser-Computer Interface

Identifiers

PMID18515840
PMCPMC2447743

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.