Evidence map›Paper›PMID 18515426›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus.

Harri T Jäälinoja, Elina Roine, Pasi Laurinmäki, Hanna M Kivelä, Dennis H Bamford, Sarah J Butcher

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. JMT-1: a novel, spherical lytic halotolerant phage isolated from Yuncheng saline lake.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2018
    Article
  7. The enigmatic archaeal virosphere.Nature reviews. Microbiology · 2017
    Review
  8. Article
  9. Article
  10. Article
  11. Cryo-electron microscopy of an extremely halophilic microbe: technical aspects.Extremophiles : life under extreme conditions · 2017
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Viruses of haloarchaea.Life (Basel, Switzerland) · 2014
    Review
  18. Article
  19. Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Harri T JäälinojaInstitute of Biotechnology and Department of Biological and Environmental Sciences, Biocenter 3, P.O. Box 65 (Viikinkaari 1), University of Helsinki, FI-00014, Helsinki, Finland.
Elina Roine
Pasi Laurinmäki
Hanna M Kivelä
Dennis H Bamford
Sarah J Butcher

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Archaea, and the viruses that infect them, are the least well understood of all of the three domains of life. They often grow in extreme conditions such as hypersaline lakes and sulfuric hot springs. Only rare glimpses have been gained into the structures of archaeal viruses. Here, we report the subnanometer resolution structure of a recently isolated, hypersalinic, membrane-containing, euryarchaeal virus, SH1, in which different viral proteins can be localized. The results indicate that SH1 has a complex capsid formed from single beta-barrels, an important missing link in hypotheses on viral capsid protein evolution. Unusual, symmetry-mismatched spikes seem to play a role in host adsorption. They are connected to highly organized membrane proteins providing a platform for capsid assembly and potential machinery for host infection.

Indexed as

Host-Pathogen InteractionsArchaeal VirusesCapsidCryoelectron MicroscopyMembrane ProteinsViral ProteinsMembrane ProteinsViral Proteins

Identifiers

PMID18515426
PMCPMC2430350

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.