Evidence map›Paper›PMID 18515401›Full record

ArticleBiophysical journal2008

Intrinsic curvature properties of photosynthetic proteins in chromatophores.

Danielle E Chandler, Jen Hsin, Christopher B Harrison, James Gumbart, Klaus Schulten

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Elucidating interprotein energy transfer dynamics within the antenna network from purple bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Large-Scale Molecular Dynamics Simulations of Cellular Compartments.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Biophysics of membrane curvature remodeling at molecular and mesoscopic lengthscales.Journal of physics. Condensed matter : an Institute of Physics journal · 2018
    Article
  12. Membrane remodelling in bacteria.Journal of structural biology · 2016
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Recent Developments and Applications of the CHARMM force fields.Wiley interdisciplinary reviews. Computational molecular science · 2012
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Danielle E ChandlerDepartment of Physics, University of Illinois at Urbana-Champaign, USA.
Jen Hsin
Christopher B Harrison
James Gumbart
Klaus Schulten
University of Illinois Urbana-Champaign · US

Funding

WHOLE CELL SIMULATIONP41RR005969 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI STONE, JOHN H · 1990 to 2011
$19.8M
System-Level Simulation of a Bioenergetic MembraneR01GM067887 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2003 to 2018
$4.0M
NCRR NIH HHS P41 RR005969NIGMS NIH HHS R01 GM067887PHS HHS P41-RRO5969
6 · The paper itself

Abstract

In purple bacteria, photosynthesis is carried out on large indentations of the bacterial plasma membrane termed chromatophores. Acting as primitive organelles, chromatophores are densely packed with the membrane proteins necessary for photosynthesis, including light harvesting complexes LH1 and LH2, reaction center (RC), and cytochrome bc(1). The shape of chromatophores is primarily dependent on species, and is typically spherical or flat. How these shapes arise from the protein-protein and protein-membrane interactions is still unknown. Now, using molecular dynamics simulations, we have observed the dynamic curvature of membranes caused by proteins in the chromatophore. A membrane-embedded array of LH2s was found to relax to a curved state, both for LH2 from Rps. acidophila and a homology-modeled LH2 from Rb. sphaeroides. A modeled LH1-RC-PufX dimer was found to develop a bend at the dimerizing interface resulting in a curved shape as well. In contrast, the bc(1) complex, which has not been imaged yet in native chromatophores, did not induce a preferred membrane curvature in simulation. Based on these results, a model for how the different photosynthetic proteins influence chromatophore shape is presented.

Indexed as

PhotosynthesisAmino Acid SequenceBacterial ChromatophoresBacterial ProteinsDimerizationElectron Transport Complex IIILight-Harvesting Protein ComplexesMembrane ProteinsModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, QuaternaryRhodopseudomonasBacterial ProteinsElectron Transport Complex IIILight-Harvesting Protein ComplexesMembrane Proteins

Identifiers

PMID18515401
PMCPMC2527265
OpenAlexW2151787001

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.