Evidence map›Paper›PMID 18511455›Full record

ArticleHuman molecular genetics2008

Novel variants in human Aquaporin-4 reduce cellular water permeability.

Marco D Sorani, Zsolt Zador, Evan Hurowitz, Donghong Yan, Kathleen M Giacomini, Geoffrey T Manley

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Brain water content in sudden unexpected infant death.Forensic science, medicine, and pathology · 2023
    Article
  4. dbAQP-SNP: a database of missense single-nucleotide polymorphisms in human aquaporins.Database : the journal of biological databases and curation · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Observational
  17. Review
  18. Article
  19. Article
  20. Aquaporin Water Channels and Hydrocephalus.Pediatric neurosurgery · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Marco D SoraniProgram in Biological and Medical Informatics, University of California, San Francisco, San Francisco, CA 94110, USA.
Zsolt Zador
Evan Hurowitz
Donghong Yan
Kathleen M Giacomini
Geoffrey T Manley
University of California, San Francisco · USInstitute for Medical Informatics and Biostatistics · CH

Funding

Role of Aquaporin-4 Water Channels in Cerebral EdemaR01NS050173 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MANLEY, GEOFFREY T · 2005 to 2009
$1.5M
PREDOCTORAL FELLOWSHIPS FOR STUDENTS WITH DISABILITIESF31NS049691 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SORANI, MARCO D · 2004 to 2007
$95k
NINDS NIH HHS NS049691NINDS NIH HHS NS050173NINDS NIH HHS R01 NS050173
6 · The paper itself

Abstract

Cerebral edema contributes significantly to morbidity and mortality after brain injury and stroke. Aquaporin-4 (AQP4), a water channel expressed in astrocytes, plays a key role in brain water homeostasis. Genetic variants in other aquaporin family members have been associated with disease phenotypes. However, in human AQP4, only one non-synonymous single-nucleotide polymorphism (nsSNP) has been reported, with no characterization of protein function or disease phenotype. We analyzed DNA from an ethnically diverse cohort of 188 individuals to identify novel AQP4 variants. AQP4 variants were constructed by site-directed mutagenesis and expressed in cells. Water permeability assays in the cells were used to measure protein function. We identified 24 variants in AQP4 including four novel nsSNPs (I128T, D184E, I205L and M224T). We did not observe the previously documented M278T in our sample. The nsSNPs found were rare ( approximately 1-2% allele frequency) and heterozygous. Computational analysis predicted reduced function mutations. Protein expression and membrane localization were similar for reference AQP4 and the five AQP4 mutants. Cellular assays confirmed that four variant AQP4 channels reduced normalized water permeability to between 26 and 48% of the reference (P < 0.001), while the M278T mutation increased normalized water permeability (P < 0.001). We identified multiple novel AQP4 SNPs and showed that four nsSNPs reduced water permeability. The previously reported M278T mutation resulted in gain of function. Our experiments provide insight into the function of the AQP4 protein. These nsSNPs may have clinical implications for patients with cerebral edema and related disorders.

Indexed as

Polymorphism, Single NucleotideAmino Acid SequenceAnimalsAquaporin 4Brain EdemaCattleComputational BiologyDogsHaplotypesHumansLinkage DisequilibriumMiceMolecular Sequence DataMutationPermeabilityRatsAquaporin 4Water

Identifiers

PMID18511455
PMCPMC2733814
OpenAlexW2114771850

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.