Evidence map›Paper›PMID 18511339›Full record

ArticleTuberculosis (Edinburgh, Scotland)2008

Characterization of temperate phage Che12 and construction of a new tool for diagnosis of tuberculosis.

Vanaja Kumar, Prabakaran Loganathan, Gomathi Sivaramakrishnan, Jordan Kriakov, Azger Dusthakeer, Balaji Subramanyam, John Chan, William R Jacobs, Narayanan Paranji Rama

Open access · greenAbstract read
In one paragraph

Article in Tuberculosis (Edinburgh, Scotland), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.9field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Phage-Based Applications in Synthetic Biology.Annual review of virology · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Vanaja KumarTuberculosis Research Centre (Indian Council of Medical Research), Bacteriology, Mayor V.R. Ramanathan Road, Chetput, Chennai 600 031, India. vanaja_kumar@hotmail.com
Prabakaran Loganathan
Gomathi Sivaramakrishnan
Jordan Kriakov
Azger Dusthakeer
Balaji Subramanyam
John Chan
William R Jacobs
Narayanan Paranji Rama
Indian Council of Medical Research · INAlbert Einstein College of Medicine · US

Funding

INTERNATIONAL TRAINING IN AIDS/TB PREVENTION RESEARCHD43TW001403 · FIC · YESHIVA UNIVERSITY · PI PRASAD, VINAYAKA R. · 2000 to 2011
$3.8M
FIC NIH HHS D43 TW001403
6 · The paper itself

Abstract

A temperate phage, Che12, able to infect Mycobacterium tuberculosis, was isolated from soil samples taken from tuberculosis sanatorium area in Chennai, India. The plaque morphology of this phage showed varying grades of turbidity on lawns of M. tuberculosis. The temperate nature of Che12 was established by super infection immunity. Phage integration into the host genomic DNA was confirmed by Southern hybridization using Che12 DNA as a probe. PCR amplification and sequencing of a part of the integrated phage genome in a M. tuberculosis lysogen also confirmed the temperate nature of Che12. The morphology of the phage particles was observed by electron microscopy, revealing similarities to other mycobacteriophages like L5, D29 and TM4. A luciferase reporter phage, phAETRC16, was constructed by cloning firefly luciferase gene into Che12. Infection of viable M. tuberculosis cells by phAETRC16 resulted in expression of luciferase leading to sustained light output. Che12, a true temperate phage infecting M. tuberculosis, is thus ideally suited for developing a diagnostic tool facilitating rapid diagnosis of M. tuberculosis.

Indexed as

AnimalsDNA, ViralGenes, ReporterHumansIndiaLuciferases, FireflyMicrobial Sensitivity TestsMolecular Sequence DataMycobacteriophagesMycobacterium smegmatisMycobacterium tuberculosisSuperinfectionTuberculosis, PulmonaryViral Plaque AssayDNA, ViralLuciferases, Firefly

Identifiers

PMID18511339
PMCPMC2678029
OpenAlexW2027443211

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.