Evidence map›Paper›PMID 18510924›Full record

ArticleCell2008

XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations.

Li Fan, Jill O Fuss, Quen J Cheng, Andrew S Arvai, Michal Hammel, Victoria A Roberts, Priscilla K Cooper, John A Tainer

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 237 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
237citing papers in PubMed, 1 pooled it
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

237 citing papers in PubMed, 1 synthesis or guideline pooled it, 361 citations in OpenAlex.

  1. Pooled it
  2. Article
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  5. Review
  6. Review
  7. Article
  8. Review
  9. A new crystal form of the DNA-free full-length XPD helicase from Thermoplasma acidophilum.Acta crystallographica. Section F, Structural biology communications · 2026
    Article
  10. Article
  11. Article
  12. Article
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  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Structure, function and evolution of the bacterial DinG-like proteins.Computational and structural biotechnology journal · 2025
    Review
  20. Article

177 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Li FanDepartment of Molecular Biology, Skaggs Institute of Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Jill O Fuss
Quen J Cheng
Andrew S Arvai
Michal Hammel
Victoria A Roberts
Priscilla K Cooper
John A Tainer
Lawrence Berkeley National Laboratory · USScripps Research Institute · USSan Diego Supercomputer Center · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Structural Biology of XPB and XPD HelicasesR01CA112093 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2006 to 2015
$3.1M
Computation and Mass Spec: Predicting Protein ComplexesR01GM070996 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TEN EYCK, LYNN F. · 2004 to 2007
$1.3M
Structural Biology of MDC1, a Novel Checkpoint MediatorF32CA108393 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI FUSS, JILL O · 2004 to 2006
$154k
NCI NIH HHS 1F32CA108393NCI NIH HHS F32 CA108393NCI NIH HHS P01 CA092584NCI NIH HHS P01 CA92584NCI NIH HHS R01 CA112093NIGMS NIH HHS GM070996NIGMS NIH HHS R01 GM070996
6 · The paper itself

Abstract

Mutations in XPD helicase, required for nucleotide excision repair (NER) as part of the transcription/repair complex TFIIH, cause three distinct phenotypes: cancer-prone xeroderma pigmentosum (XP), or aging disorders Cockayne syndrome (CS), and trichothiodystrophy (TTD). To clarify molecular differences underlying these diseases, we determined crystal structures of the XPD catalytic core from Sulfolobus acidocaldarius and measured mutant enzyme activities. Substrate-binding grooves separate adjacent Rad51/RecA-like helicase domains (HD1, HD2) and an arch formed by 4FeS and Arch domains. XP mutations map along the HD1 ATP-binding edge and HD2 DNA-binding channel and impair helicase activity essential for NER. XP/CS mutations both impair helicase activity and likely affect HD2 functional movement. TTD mutants lose or retain helicase activity but map to sites in all four domains expected to cause framework defects impacting TFIIH integrity. These results provide a foundation for understanding disease consequences of mutations in XPD and related 4Fe-4S helicases including FancJ.

Indexed as

Archaeal ProteinsCockayne SyndromeCrystallography, X-RayDNA HelicasesDNA RepairIron-Sulfur ProteinsModels, MolecularMutationProtein Structure, TertiarySequence Homology, Amino AcidStructural Homology, ProteinSulfolobus acidocaldariusTrichothiodystrophy SyndromesXeroderma PigmentosumXeroderma Pigmentosum Group D ProteinArchaeal ProteinsDNA HelicasesIron-Sulfur ProteinsXeroderma Pigmentosum Group D Protein

Identifiers

PMID18510924
PMCPMC3055247
OpenAlexW2114382972

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.