Evidence map›Paper›PMID 18508937›Full record

ArticleJournal of clinical microbiology2008

Multiplex real-time PCR assay for rapid identification of Mycobacterium tuberculosis complex members to the species level.

Benjamin A Pinsky, Niaz Banaei

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 78 citations in OpenAlex.

  1. Biographical Feature: Benjamin A. Pinsky, MD, PhD.Journal of clinical microbiology · 2026
    Article
  2. Virulence ofVeterinary medicine international · 2026
    Article
  3. Article
  4. Article
  5. Rapid Identification ofFrontiers in microbiology · 2022
    Article
  6. Article
  7. Article
  8. Accurate Identification of Closely RelatedFrontiers in cellular and infection microbiology · 2021
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Antimycobacterial activity of Pichia pastoris-derived mature bovine neutrophil β-defensins 5.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2014
    Article
  15. Article
  16. Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Benjamin A PinskyDepartment of Pathology, Stanford University School of Medicine, Stanford, CA 94305-5324, USA. bpinsky@stanford.edu
Niaz Banaei
Stanford Health Care · US

Funding

Identification/Characterization of M. tuberculosis GenesK08AI061105 · NIAID · STANFORD UNIVERSITY · PI BANAIEE, NIAZ · 2004 to 2007
$498k
NIAID NIH HHS K08 AI06110NIAID NIH HHS K08 AI061105NIAID NIH HHS L30 AI061958
6 · The paper itself

Abstract

The species identification of members of the Mycobacterium tuberculosis complex is critical to the timely initiation of both appropriate antibiotic therapy and proper public health control measures. However, the current commercially available molecular assays identify mycobacteria only to the complex level and are unable to differentiate M. tuberculosis from the closely related M. bovis and M. bovis BCG. We describe here a rapid and robust two-step, multiplex, real-time PCR assay based on genomic deletions to definitively identify M. tuberculosis, M. bovis, M. bovis BCG, and other members of the complex. When tested against a panel of well-characterized mycobacterial reference strains, the assay was both sensitive and specific, correctly identifying all strains. We applied this assay to 60 clinical isolates previously identified as M. tuberculosis complex and found 57 M. tuberculosis isolates and 3 M. bovis BCG isolates from patients who had received intravesical BCG. Furthermore, analysis of 15 clinical specimens previously identified as M. bovis by spoligotyping revealed an isolate of M. tuberculosis that had been misidentified. We propose that this assay will allow the routine identification of M. tuberculosis complex members in the clinical laboratory.

Indexed as

DNA PrimersHumansMycobacterium bovisMycobacterium tuberculosisPolymerase Chain ReactionSensitivity and SpecificityTuberculosisDNA Primers

Identifiers

PMID18508937
PMCPMC2446918
OpenAlexW2164931582

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.