Evidence map›Paper›PMID 18508894›Full record

ArticleJournal of virology2008

NS3 helicase domains involved in infectious intracellular hepatitis C virus particle assembly.

Yinghong Ma, Jeremy Yates, Yuqiong Liang, Stanley M Lemon, MinKyung Yi

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 194 citations in OpenAlex.

  1. Article
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  8. Review
  9. HCV Assembly and Egress via Modifications in Host Lipid Metabolic Systems.Cold Spring Harbor perspectives in medicine · 2021
    Review
  10. Article
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  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
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71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yinghong MaCenter for Hepatitis Research, The University of Texas Medical Branch at Galveston, 301 University Boulevard, Galveston, TX 77555-1073, USA.
Jeremy Yates
Yuqiong Liang
Stanley M Lemon
MinKyung Yi
The University of Texas Medical Branch at Galveston · US

Funding

Virus-Host Interactions in Hepatitis C Virus (HCV) InfectionsU19AI040035 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI RAY, STUART C · 1996 to 2009
$12.0M
Functions of NS3 in HCV RNA ReplicationR21AI063451 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI YI, MINKYUNG · 2005 to 2006
$410k
NIAID NIH HHS N01 AI025488NIAID NIH HHS R21 AI063451NIAID NIH HHS R21-AI063451NIAID NIH HHS U19 AI040035NIAID NIH HHS U19-AI40035
6 · The paper itself

Abstract

A mutation within subdomain 1 of the hepatitis C virus (HCV) NS3 helicase (NS3-Q221L) (M. Yi, Y. Ma, J. Yates, and S. M. Lemon, J. Virol. 81:629-638, 2007) rescues a defect in production of infectious virus by an intergenotypic chimeric RNA (HJ3). Although NS3-Gln-221 is highly conserved across HCV genotypes, the Leu-221 substitution had no effect on RNA replication or NS3-associated enzymatic activities. However, while transfection of unmodified HJ3 RNA failed to produce either extracellular or intracellular infectious virus, transfection of HJ3 RNA containing the Q221L substitution (HJ3/QL) resulted in rapid accumulation of intracellular infectious particles with release into extracellular fluids. In the absence of the Q221L mutation, both NS5A and NS3 were recruited to core protein on the surface of lipid droplets, but there was no assembly of core into high-density, rapidly sedimenting particles. Further analysis demonstrated that a Q221N mutation minimally rescued virus production and led to a second-site I399V mutation in subdomain 2 of the helicase. Similarly, I399V alone allowed only low-level virus production and led to selection of an I286V mutation in subdomain 1 of the helicase which fully restored virus production, confirming the involvement of both major helicase subdomains in the assembly process. Thus, multiple mutations in the helicase rescue a defect in an early-intermediate step in virus assembly that follows the recruitment of NS5A to lipid droplets and precedes the formation of dense intracellular viral particles. These data reveal a previously unsuspected role for the NS3 helicase in early virion morphogenesis and provide a new perspective on HCV assembly.

Indexed as

Virus AssemblyAmino Acid SubstitutionCytoplasmDEAD-box RNA HelicasesDNA Mutational AnalysisGenetic Complementation TestHepacivirusHumansMutation, MissenseNucleoside-TriphosphataseProtein Structure, TertiaryRNA-Dependent RNA PolymeraseSerine EndopeptidasesViral Core ProteinsViral Nonstructural ProteinsViral ProteasesDEAD-box RNA HelicasesNS3 protein, hepatitis C virusNS-5 protein, hepatitis C virusnucleocapsid protein, Hepatitis C virusNucleoside-TriphosphataseRNA-Dependent RNA PolymeraseSerine EndopeptidasesViral Core ProteinsViral Nonstructural ProteinsViral Proteases

Identifiers

PMID18508894
PMCPMC2493332
OpenAlexW2141200498

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.