Evidence map›Paper›PMID 18508892›Full record

ArticleJournal of virology2008

Visualization of the externalized VP2 N termini of infectious human parvovirus B19.

Bärbel Kaufmann, Paul R Chipman, Victor A Kostyuchenko, Susanne Modrow, Michael G Rossmann

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 79 citations in OpenAlex.

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  12. Nuclear entry and egress of parvoviruses.Molecular microbiology · 2022
    Review
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  14. Article
  15. Article
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  18. Molecular biology and structure of a novel penaeid shrimp densovirus elucidate convergent parvoviral host capsid evolution.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Bärbel KaufmannDepartment of Biological Sciences, Purdue University, 915 West State Street, West Lafayette, IN 47907-2054, USA.
Paul R Chipman
Victor A Kostyuchenko
Susanne Modrow
Michael G Rossmann
State Street (United States) · USUniversity of Regensburg · DE

Funding

STRUCTURE OF A SMALL SPHERICAL VIRUSR37AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI ROSSMANN, MICHAEL G · 1986 to 2015
$6.6M
STRUCTURE OF A SMALL SPHERICAL VIRUSR01AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI KUHN, RICHARD J. · 1985 to 2020
$2.4M
PARVOVIRUS STRUCTURE, CAPSID ASSEMBLY, AND RECEPTORSR01AI033468 · NIAID · CORNELL UNIVERSITY ITHACA · PI PARRISH, COLIN R. · 1993 to 2007
$2.3M
NIAID NIH HHS AI11219NIAID NIH HHS AI33468NIAID NIH HHS R01 AI011219NIAID NIH HHS R01 AI033468NIAID NIH HHS R37 AI011219
6 · The paper itself

Abstract

The structures of infectious human parvovirus B19 and empty wild-type particles were determined by cryoelectron microscopy (cryoEM) to 7.5-A and 11.3-A resolution, respectively, assuming icosahedral symmetry. Both of these, DNA filled and empty, wild-type particles contain a few copies of the minor capsid protein VP1. Comparison of wild-type B19 with the crystal structure and cryoEM reconstruction of recombinant B19 particles consisting of only the major capsid protein VP2 showed structural differences in the vicinity of the icosahedral fivefold axes. Although the unique N-terminal region of VP1 could not be visualized in the icosahedrally averaged maps, the N terminus of VP2 was shown to be exposed on the viral surface adjacent to the fivefold beta-cylinder. The conserved glycine-rich region is positioned between two neighboring, fivefold-symmetrically related VP subunits and not in the fivefold channel as observed for other parvoviruses.

Indexed as

Capsid ProteinsCryoelectron MicroscopyHumansModels, MolecularParvovirus B19, HumanProtein ConformationVirionCapsid Proteinscapsid protein VP1, parvovirus B19capsid protein VP2, parvovirus B19

Identifiers

PMID18508892
PMCPMC2493345
OpenAlexW2080159049

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.