Evidence map›Paper›PMID 18508812›Full record

ArticleJournal of experimental botany2008

Concerted modulation of alanine and glutamate metabolism in young Medicago truncatula seedlings under hypoxic stress.

Anis M Limami, Gaëlle Glévarec, Claudie Ricoult, Jean-Bernard Cliquet, Elisabeth Planchet

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 122 citations in OpenAlex.

  1. The TaERF3-Plants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Role of alanine aminotransferase in crop resilience to climate change: a critical review.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  13. Dissection ofBiology · 2022
    Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Plants (Basel, Switzerland) · 2021
    Article
  20. Metabolic Responses of a Model Green MicroalgaFrontiers in bioengineering and biotechnology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Anis M LimamiUniversity of Angers, UMR 1191, Physiologie Moléculaire des Semences, 2 Bd Lavoisier, F-49045, Angers, France. anis.limami@univ-angers.fr
Gaëlle Glévarec
Claudie Ricoult
Jean-Bernard Cliquet
Elisabeth Planchet
Université d'Angers · FRUniversité de Caen Normandie · FRUniversité de Tours · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The modulation of primary nitrogen metabolism by hypoxic stress was studied in young Medicago truncatula seedlings. Hypoxic seedlings were characterized by the up-regulation of glutamate dehydrogenase 1 (GDH1) and mitochondrial alanine aminotransferase (mAlaAT), and down-regulation of glutamine synthetase 1b (GS1b), NADH-glutamate synthase (NADH-GOGAT), glutamate dehydrogenase 3 (GDH3), and isocitrate dehydrogenase (ICDH) gene expression. Hypoxic stress severely inhibited GS activity and stimulated NADH-GOGAT activity. GDH activity was lower in hypoxic seedlings than in the control, however, under either normoxia or hypoxia, the in vivo activity was directed towards glutamate deamination. (15)NH(4) labelling showed for the first time that the adaptive reaction of the plant to hypoxia consisted of a concerted modulation of nitrogen flux through the pathways of both alanine and glutamate synthesis. In hypoxic seedlings, newly synthesized (15)N-alanine increased and accumulated as the major amino acid, asparagine synthesis was inhibited, while (15)N-glutamate was synthesized at a similar rate to that in the control. A discrepancy between the up-regulation of GDH1 expression and the down-regulation of GDH activity by hypoxic stress highlighted for the first time the complex regulation of this enzyme by hypoxia. Higher rates of glycolysis and ethanol fermentation are known to cause the fast depletion of sugar stores and carbon stress. It is proposed that the expression of GDH1 was stimulated by hypoxia-induced carbon stress, while the enzyme protein might be involved during post-hypoxic stress contributing to the regeneration of 2-oxoglutarate via the GDH shunt.

Indexed as

AlanineAlanine TransaminaseCarbonGene Expression Regulation, PlantGlutamate DehydrogenaseGlutamate Synthase (NADH)Glutamic AcidIsocitrate DehydrogenaseMedicago truncatulaNitrogenOxygenPlant ProteinsQuaternary Ammonium CompoundsReverse Transcriptase Polymerase Chain ReactionSeedlingsAlanineAlanine TransaminaseCarbonGlutamate DehydrogenaseGlutamate Synthase (NADH)Glutamic AcidIsocitrate DehydrogenaseNitrogenOxygenPlant ProteinsQuaternary Ammonium Compounds

Identifiers

PMID18508812
PMCPMC2423662
OpenAlexW2142630217

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.