Evidence map›Paper›PMID 18508805›Full record

ArticleNucleic acids research2008

A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast.

Ronita Nag, Feng Gong, Deirdre Fahy, Michael J Smerdon

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. DNA Repair in Nucleosomes: Insights from Histone Modifications and Mutants.International journal of molecular sciences · 2024
    Review
  2. Histone mutations in cancer.Biochemical Society transactions · 2023
    Article
  3. Article
  4. Review
  5. Article
  6. Article
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  15. Article
  16. Review
  17. Article
  18. Illuminating genome repair by photolyase.Photochemistry and photobiology
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ronita NagBiochemistry and Biophysics, School of Molecular Biosciences,Washington State University, Pullman, WA 99164-4660, USA.
Feng Gong
Deirdre Fahy
Michael J Smerdon
Washington State University · US

Funding

DNA REPAIR IN A HORMONE-RESPONSIVE GENER01ES004106 · NIEHS · WASHINGTON STATE UNIVERSITY · PI SMERDON, MICHAEL J · 1986 to 2014
$4.5M
NIEHS NIH HHS ES04106NIEHS NIH HHS R01 ES004106
6 · The paper itself

Abstract

Single amino acid changes at specific DNA contacts of histones H3 and H4 generate SWI/SNF-independent (Sin) mutants in yeast. We have analyzed the effect of the Sin mutation at R45 of histone H4 on cell survival following UV irradiation, nucleotide excision repair (NER) and chromatin structure. We find that this mutation renders yeast cells more resistant to UV damage and enhances NER at specific chromatin loci. In the transcriptionally silent HML, repressed GAL10 and the constitutively active RPB2 loci, H4 R45 mutants exhibit enhanced repair of UV-induced cyclobutane pyrimidine dimers (CPDs) compared to wild-type (wt). However, the H4 R45 mutation does not increase the transcription of NER genes, disrupt transcriptional silencing of the HML locus or alter repression in the GAL10 locus. We have further shown that the H4 R45C mutation increases the accessibility of nucleosome DNA in chromatin to exogenous nucleases and may expedite nucleosome rearrangements during NER. Taken together, our results indicate that the increased repair observed in Sin mutants is a direct effect of the altered chromatin landscape caused by the mutation, suggesting that such subtle changes in the conserved histone residues can influence the accessibility of DNA repair factors in chromatin.

Indexed as

DNA RepairUltraviolet RaysAdenosine TriphosphatasesAmino Acid SubstitutionCell SurvivalChromatinDeoxyribonucleasesDNA DamageGene DeletionGene ExpressionGene SilencingHistonesKineticsRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphatasesChromatinDeoxyribonucleasesHistonesRAD26 protein, S cerevisiaeRNA Polymerase IISaccharomyces cerevisiae Proteins

Identifiers

PMID18508805
PMCPMC2441814
OpenAlexW2099986744

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.