ArticleGenetics2008
Nonindependent domestication of the two rice subspecies, Oryza sativa ssp. indica and ssp. japonica, demonstrated by multilocus microsatellites.
Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
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41 citing papers in PubMed.
- Novel genome editing approaches to manipulate apical meristem activity for crop yield.Frontiers in plant science · 2026Review
- Genome-Wide Dissection of Selection on microRNA Target Genes Involved in Rice Flower Development.Plants (Basel, Switzerland) · 2024Article
- Somatic Embryogenesis andPlants (Basel, Switzerland) · 2024Article
- Investigation on Nutritional, Phytochemical, and Antioxidant Abilities of Various Traditional Rice Varieties.Applied biochemistry and biotechnology · 2023Article
- Mitochondrial markers differentiate two distinct phylogenetic groups in indigenous rice landraces of northeast India: an evolutionary insight.Journal of genetics · 2023Article
- Selection and Validation of 48 KASP Markers for Variety Identification and Breeding Guidance in Conventional and Hybrid Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2022Article
- Early Domestication History of Asian Rice Revealed by Mutations and Genome-Wide Analysis of Gene Genealogies.Rice (New York, N.Y.) · 2022Article
- Development of 454 New Kompetitive Allele-Specific PCR (KASP) Markers for TemperatePlants (Basel, Switzerland) · 2020Article
- Wide crossing diversify mitogenomes of rice.BMC plant biology · 2020Article
- Signatures of differential selection in chloroplast genome between japonica and indica.Rice (New York, N.Y.) · 2019Article
- Evidence for selection events during domestication by extensive mitochondrial genome analysis between japonica and indica in cultivated rice.Scientific reports · 2019Article
- The complex geography of domestication of the African rice Oryza glaberrima.PLoS genetics · 2019Article
- Genetic and phenotypic diversity in 2000 years old maize (Zea mays L.) samples from the Tarapacá region, Atacama Desert, Chile.PloS one · 2019Article
- Neo-Domestication of an Interspecific TetraploidGenes · 2018Article
- Multiple Origin but Single Domestication Led toG3 (Bethesda, Md.) · 2018Article
- Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice.Molecular biology and evolution · 2018Article
- Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice.Genome research · 2017Article
- Fast diffusion of domesticated maize to temperate zones.Scientific reports · 2017Article
- Article
- Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.Scientific reports · 2016Article
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2 authors.
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Abstract
The origins of the Asian cultivated rice Oryza sativa from its wild ancestor O. rufipogon have been debated for decades. The question mainly concerns whether it originated monophyletically or polyphyletically. To shed light on the origins and demographic history of rice domestication, we genotyped a total of 92 individual plants from the two O. sativa subspecies and O. rufipogon for 60 microsatellites. An approximate Bayesian method was applied to estimate demographic parameters for O. rufipogon vs. O. sativa ssp. indica and O. rufipogon vs. O. sativa ssp. japonica. We showed that the japonica subspecies suffered a more severe bottleneck than the indica subspecies and thus a greater loss of genetic variation during its domestication. Across microsatellite loci there is a significant positive correlation in the reduction of genetic diversity between the two subspecies. The results suggest that completely independent domestication of indica and japonica subspecies may not explain our data and that there is at least partial sharing of their ancestral populations and/or recent gene flow between them.
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