Evidence map›Paper›PMID 18505722›Full record

ArticleThe Journal of biological chemistry2008

Substrate cleavage analysis of furin and related proprotein convertases. A comparative study.

Albert G Remacle, Sergey A Shiryaev, Eok-Soo Oh, Piotr Cieplak, Anupama Srinivasan, Ge Wei, Robert C Liddington, Boris I Ratnikov, Amelie Parent, Roxane Desjardins and 4 more

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 141 citations in OpenAlex.

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  15. Targeting Crucial Host Factors of SARS-CoV-2.ACS infectious diseases · 2020
    Review
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Albert G RemacleBurnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA.
Sergey A Shiryaev
Eok-Soo Oh
Piotr Cieplak
Anupama Srinivasan
Ge Wei
Robert C Liddington
Boris I Ratnikov
Amelie Parent
Roxane Desjardins
Robert Day
Jeffrey W Smith
Michal Lebl
Alex Y Strongin
Institute for Medical Research · USSanford Burnham Prebys Medical Discovery Institute · USUniversité de Sherbrooke · CAIllumina (United States) · US

Funding

CORE 6 : PROJECT LEADERSHIP AND ADMINISTRATIONU54RR020843 · NCRR · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI SMITH, JEFFREY W · 2004 to 2009
$19.1M
Virulence Factors and Cell DeathP01AI055789 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI REED, JOHN C · 2004 to 2008
$15.5M
Structure-based Drug Design for Smallpox TherapyU01AI061139 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI STRONGIN, ALEX Y · 2004 to 2008
$8.8M
NCRR NIH HHS RR 020843NCRR NIH HHS U54 RR020843NIAID NIH HHS AI 055789NIAID NIH HHS AI 061139
6 · The paper itself

Abstract

We present the data and the technology, a combination of which allows us to determine the identity of proprotein convertases (PCs) related to the processing of specific protein targets including viral and bacterial pathogens. Our results, which support and extend the data of other laboratories, are required for the design of effective inhibitors of PCs because, in general, an inhibitor design starts with a specific substrate. Seven proteinases of the human PC family cleave the multibasic motifs R-X-(R/K/X)-R downward arrow and, as a result, transform proproteins, including those from pathogens, into biologically active proteins and peptides. The precise cleavage preferences of PCs have not been known in sufficient detail; hence we were unable to determine the relative importance of the individual PCs in infectious diseases, thus making the design of specific inhibitors exceedingly difficult. To determine the cleavage preferences of PCs in more detail, we evaluated the relative efficiency of furin, PC2, PC4, PC5/6, PC7, and PACE4 in cleaving over 100 decapeptide sequences representing the R-X-(R/K/X)-R downward arrow motifs of human, bacterial, and viral proteins. Our computer analysis of the data and the follow-on cleavage analysis of the selected full-length proteins corroborated our initial results thus allowing us to determine the cleavage preferences of the PCs and to suggest which PCs are promising drug targets in infectious diseases. Our results also suggest that pathogens, including anthrax PA83 and the avian influenza A H5N1 (bird flu) hemagglutinin precursor, evolved to be as sensitive to PC proteolysis as the most sensitive normal human proteins.

Indexed as

Amino Acid MotifsAmino Acid SequenceComputational BiologyFurinHumansMass SpectrometryModels, BiologicalMolecular Sequence DataNucleic Acid HybridizationPeptidesProprotein ConvertasesProtein BindingProtein DenaturationProtein FoldingSubstrate SpecificityFurinPeptidesProprotein Convertases

Identifiers

PMID18505722
PMCPMC2475709
OpenAlexW1965152120

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.