Evidence map›Paper›PMID 18505283›Full record

ArticleJournal of proteome research2008

Enrichment of distinct microfilament-associated and GTP-binding-proteins in membrane/microvilli fractions from lymphoid cells.

Jian-Jiang Hao, Guanghui Wang, Trairak Pisitkun, Genaro Patino-Lopez, Kunio Nagashima, Mark A Knepper, Rong-Fong Shen, Stephen Shaw

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of proteome research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Inherited human ezrin deficiency impairs adaptive immunity.The Journal of allergy and clinical immunology · 2023
    Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Myosin-I molecular motors at a glance.Journal of cell science · 2016
    Review
  7. Review
  8. Kindlin-3 regulates integrin activation and adhesion reinforcement of effector T cells.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. LOK is a major ERM kinase in resting lymphocytes and regulates cytoskeletal rearrangement through ERM phosphorylation.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Jian-Jiang HaoExperimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Guanghui Wang
Trairak Pisitkun
Genaro Patino-Lopez
Kunio Nagashima
Mark A Knepper
Rong-Fong Shen
Stephen Shaw
National Institutes of Health · USNational Heart Lung and Blood Institute · USNational Cancer Institute · US

Funding

Solute And Water Transport In Renal EpitheliaZIAHL001285 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI KNEPPER, MARK · 2009 to 2025
$34.9M
SOLUTE AND WATER TRANSPORT IN RENAL EPITHELIAZ01HL001285 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI KNEPPER, MARK A · 1998 to 2008
$3.8M
MECHANISMS OF CELLULAR IMMUNE RESPONSESZ01BC009257 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHAW, JAMES · 1996 to 2008
$2.2M
ERM phosphorylation in lymphocytesZIABC010995 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHAW, JAMES · 2009 to 2012
$1.2M
Molecular architecture of lymphocyte cortexZIABC010993 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHAW, JAMES · 2009 to 2012
$1.1M
Lymphocyte membrane-proximal basophilic kinasesZIABC010994 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHAW, JAMES · 2009 to 2012
$472k
Mechanisms of Cellular Immune ResponsesZIABC009257 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHAW, JAMES · 2009 to 2012
$377k
Intramural NIH HHS Z01 BC009257Intramural NIH HHS Z01 HL001285Intramural NIH HHS Z99 CA999999Intramural NIH HHS Z99 HL999999NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400
6 · The paper itself

Abstract

Lymphocyte microvilli mediate initial adhesion to endothelium during lymphocyte transition from blood into tissue but their molecular organization is incompletely understood. We modified a shear-based procedure to prepare biochemical fractions enriched for membrane/microvilli (MMV) from both human peripheral blood T-lymphocytes (PBT) and a mouse pre-B lymphocyte line (300.19). Enrichment of proteins in MMV relative to post nuclear lysate was determined by LC/MS/MS analysis and label-free quantitation. Subsequent analysis emphasized the 291 proteins shared by PBT and 300.19 and estimated by MS peak area to be highest abundance. Validity of the label-free quantitation was confirmed by many internal consistencies and by comparison with Western blot analyses. The MMV fraction was enriched primarily for subsets of cytoskeletal proteins, transmembrane proteins and G-proteins, with similar patterns in both lymphoid cell types. The most enriched cytoskeletal proteins were microfilament-related proteins NHERF1, Ezrin/Radixin/Moesin (ERMs), ADF/cofilin and Myosin1G. Other microfilament proteins such as talin, gelsolin, myosin II and profilin were markedly reduced in MMV, as were intermediate filament- and microtubule-related proteins. Heterotrimeric G-proteins and some small G-proteins (especially Ras and Rap1) were enriched in the MMV preparation. Two notable general observations also emerged. There was less overlap between the two cells in their transmembrane proteins than in other classes of proteins, consistent with a special role of plasma membrane proteins in differentiation. Second, unstimulated primary T-lymphocytes have an unusually high concentration of actin and other microfilament related proteins, consistent with the singular role of actin-mediated motility in the immunological surveillance performed by these primary cells.

Indexed as

AnimalsCell LineCell MembraneChromatography, LiquidGTP-Binding ProteinsHumansMiceMicrofilament ProteinsMicrovilliMonomeric GTP-Binding ProteinsPrecursor Cells, B-LymphoidSpecies SpecificityTandem Mass SpectrometryT-LymphocytesGTP-Binding ProteinsMicrofilament ProteinsMonomeric GTP-Binding Proteins

Identifiers

PMID18505283
PMCPMC2562883
OpenAlexW2037116175

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.