Evidence map›Paper›PMID 18503041›Full record

ArticleJournal of experimental botany2008

The synthesis of the rhamnogalacturonan II component 3-deoxy-D-manno-2-octulosonic acid (Kdo) is required for pollen tube growth and elongation.

Frédéric Delmas, Martial Séveno, Julian G B Northey, Michel Hernould, Patrice Lerouge, Peter McCourt, Christian Chevalier

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Arabidopsis 3-Deoxy-d-Plant direct · 2025
    Article
  5. Article
  6. Review
  7. Signaling at Physical Barriers during Pollen-Pistil Interactions.International journal of molecular sciences · 2021
    Review
  8. Breeding science · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Frédéric DelmasINRA (Institut National de la Recherche Agronomique), Unité Mixte de Recherche 619 sur la Biologie du Fruit, Institut Fédératif de Recherche 103, F-33883 Villenave d'Ornon, France.
Martial Séveno
Julian G B Northey
Michel Hernould
Patrice Lerouge
Peter McCourt
Christian Chevalier
Institut National de la Recherche Agronomique · MACentre National de la Recherche Scientifique · FRUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite a very complex structure, the sugar composition of the rhamnogalacturonan II (RG-II) pectic fraction is extremely conserved. Among its constituting monosaccharides is the seldom-observed eight-carbon sugar 3-deoxy-D-manno-octulosonic acid (Kdo), whose phosphorylated precursor is synthesized by Kdo-8-P synthase. As an attempt to alter specifically the RG-II structure in its sugar composition and assess the consequences on the function of RG-II in cell wall and its relationship with growth, Arabidopsis null mutants were sought in the genes encoding Kdo-8-P synthase. Here, the isolation and characterization of one null mutant for the isoform 1 (AtkdsA1-S) and two distinct null mutants for the isoform 2 of Arabidopsis Kdo-8-P synthase (AtkdsA2-V and AtkdsA2-S) are described. Evidence is provided that AtkdsA2 gene expression is preferentially associated with plantlet organs displaying a meristematic activity, and that it accounts for 75% of the mRNAs to be translated into Kdo-8-P synthase. Furthermore, this predominant expression of AtKDSA2 over AtKDSA1 was confirmed by quantification of the cytosolic Kdo content in the mutants, in a variety of ecotypes. The inability to identify a double knockout mutant originated from pollen abortions, due to the inability of haploid pollen of the AtkdsA1- AtkdsA2- genotype to form an elongated pollen tube properly and perform fertilization.

Indexed as

Aldehyde-LyasesArabidopsisArabidopsis ProteinsBase SequenceGene Expression Regulation, PlantPectinsPollenProtein IsoformsSugar AcidsSugar Phosphates2-dehydro-3-deoxyphosphooctonate aldolase3-deoxyoctulosonate 8-phosphateAldehyde-LyasesArabidopsis ProteinsPectinsProtein Isoformsrhamnogalacturonan IISugar AcidsSugar Phosphates3-deoxy-D-manno-oct-2-ulosonate-8-phosphate3-deoxy-D-manno-oct-2-ulosonate-8-phosphate synthaseArabidopsis thalianapollen tube growthrhamnogalacturonan II

Identifiers

PMID18503041
PMCPMC2486460
OpenAlexW2142484332

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.