Evidence map›Paper›PMID 18502752›Full record

ArticleThe Journal of biological chemistry2008

Int6/eIF3e promotes general translation and Atf1 abundance to modulate Sty1 MAPK-dependent stress response in fission yeast.

Tsuyoshi Udagawa, Naoki Nemoto, Caroline R M Wilkinson, Jana Narashimhan, Li Jiang, Stephen Watt, Aaron Zook, Nic Jones, Ronald C Wek, Jürg Bähler and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Pooled it
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  4. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Tsuyoshi UdagawaMolecular Cellular and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, Kansas 66506, USA.
Naoki Nemoto
Caroline R M Wilkinson
Jana Narashimhan
Li Jiang
Stephen Watt
Aaron Zook
Nic Jones
Ronald C Wek
Jürg Bähler
Katsura Asano
Kansas State University · USCancer Research UK Manchester Institute · GBIndiana University School of MedicineCancer Research UK · GBIndiana University – Purdue University Indianapolis · USWellcome Sanger Institute · GB

Funding

UNDERSTANDING THE ROLE OF SMALL RNAS IN ARABIDOPSIS POLLEN DEVELOPMENTP20RR016475 · NCRR · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ACKLEY, BRIAN DOUGLAS · 2001 to 2011
$38.1M
Metabolic stress responses andeIF2 kinase GCN2R01GM049164 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI WEK, RONALD C · 1998 to 2019
$6.3M
HISRS-DOMAIN AND REGULATING GCN2 PROTEIN KINASER29GM049164 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI WEK, RONALD C · 1993 to 1997
–
Cancer Research UK 12485Cancer Research UK A6517Cancer Research UK C9546/A6517NCRR NIH HHS P20 RR016475NIGMS NIH HHS GM49164NIGMS NIH HHS GM67481Wellcome Trust 077118
6 · The paper itself

Abstract

int-6 is one of the frequent integration sites for mouse mammary tumor viruses. Although its product is the e-subunit of translation initiation factor eIF3, other evidence indicates that it interacts with proteasomes or other proteins to regulate protein stability. Here we report that the fission yeast int6(+) is required for overcoming stress imposed by histidine starvation, using the drug 3-aminotriazole (3AT). Microarray and complementary Northern studies using wild-type, int6Delta or gcn2Delta mutants indicate that 3AT-treated wild-type yeast induces core environmental stress response (CESR) genes in addition to typical general amino acid control (GAAC) genes whose transcription depends on the eIF2 kinase, Gcn2. In agreement with this, Sty1 MAPK and its target transcription factor Atf1, which signal the CESR, are required for overcoming 3AT-induced starvation. We find that Int6 is required for maintaining the basal level of Atf1 and for rapid transcriptional activation of the CESR on 3AT-insult. Pulse labeling experiments indicate that int6Delta significantly slows down de novo protein synthesis. Moreover, Atf1 protein half-life was reduced in int6Delta cells. These effects would account for the compromised Atf1 activity on 3AT-induced stress. Thus, the robust protein synthesis promoted by intact eIF3 appears to be a part of the requisites for sound Sty1 MAPK-dependent signaling governed by the activity of the Atf1 transcription factor.

Indexed as

Gene Expression Regulation, FungalProtein BiosynthesisAmino AcidsAmitroleEukaryotic Initiation Factor-3Gene Expression ProfilingHistidineMitogen-Activated Protein KinasesMultigene FamilyMutationProteinsSchizosaccharomycesSchizosaccharomyces pombe ProteinsSignal Transductionalcohol O-acetyltransferaseAmino AcidsAmitroleEukaryotic Initiation Factor-3HistidineMitogen-Activated Protein KinasesProteinsSchizosaccharomyces pombe Proteinssty1 protein, S pombe

Identifiers

PMID18502752
PMCPMC2494926
OpenAlexW2001890728

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.