Evidence map›Paper›PMID 18500254›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2008

Engineering and selection of shuffled AAV genomes: a new strategy for producing targeted biological nanoparticles.

Wuping Li, Aravind Asokan, Zhijian Wu, Terry Van Dyke, Nina DiPrimio, Jarrod S Johnson, Lakshmanan Govindaswamy, Mavis Agbandje-McKenna, Stefan Leichtle, D Eugene Redmond and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 143 papers.

0numbers the graph read from it
0cells of the map it votes in
143citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

143 citing papers in PubMed, 258 citations in OpenAlex.

  1. Phase 1 gene therapy for Duchenne muscular dystrophy using a translational optimized AAV vector.Molecular therapy : the journal of the American Society of Gene Therapy · 2012
    Trial
  2. Distinct YY dinucleotide periodicity in adeno-associated virus DNA.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Article
  3. Review
  4. An Expanded Toolbox for Versatile Chemical Editing of Adeno-Associated Virus.Angewandte Chemie (International ed. in English) · 2026
    Article
  5. Article
  6. The amazing AAV capsids: Into the structure-verse.Molecular therapy. Methods & clinical development · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Gene regulation technologies for gene and cell therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article

83 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Wuping LiGene Therapy Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-7352, USA.
Aravind Asokan
Zhijian Wu
Terry Van Dyke
Nina DiPrimio
Jarrod S Johnson
Lakshmanan Govindaswamy
Mavis Agbandje-McKenna
Stefan Leichtle
D Eugene Redmond
Thomas J McCown
Kimberly B Petermann
Norman E Sharpless
Richard J Samulski
University of North Carolina at Chapel Hill · USUniversity of Florida · USYale University · US

Funding

Respiratory Syncytial Virus Based Vectors for CFTRP01HL051818 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVIS, WILLIAM C. · 1993 to 2008
$16.0M
Rational and Combinatorial Engineering of AAV VectorsR01AI072176 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HIRSCH, MATTHEW LOUIS, SAMULSKI, RICHARD J · 2008 to 2017
$3.7M
GENE THERAPY AND SEIZURESR01NS035633 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MCCOWN, THOMAS J. · 1997 to 2011
$2.8M
Muscle-specific AAV Vectors for DMD Gene TherapyR21AR055712 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SAMULSKI, RICHARD J · 2007 to 2008
$342k
Directed Evolution of Adeno-Associated Virus Vectors for Seizure Gene TherapyR21NS059518 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MCCOWN, THOMAS J. · 2007 to 2008
$315k
NHLBI NIH HHS HL51818NHLBI NIH HHS P01 HL051818NIAID NIH HHS R01 AI072176NIAMS NIH HHS AR055712NINDS NIH HHS NS35633NINDS NIH HHS NS59518NINDS NIH HHS R01 NS035633NINDS NIH HHS R21 NS059518
6 · The paper itself

Abstract

We report a DNA shuffling-based approach for developing cell type-specific vectors through directed evolution. Capsid genomes of adeno-associated virus (AAV) serotypes 1-9 were randomly fragmented and reassembled using PCR to generate a chimeric capsid library. A single infectious clone (chimeric-1829) containing genome fragments from AAV1, 2, 8, and 9 was isolated from an integrin minus hamster melanoma cell line previously shown to have low permissiveness to AAV. Molecular modeling studies suggest that AAV2 contributes to surface loops at the icosahedral threefold axis of symmetry, while AAV1 and 9 contribute to two- and fivefold symmetry interactions, respectively. The C-terminal domain (AAV9) was identified as a critical structural determinant of melanoma tropism through rational mutagenesis. Chimeric-1829 utilizes heparan sulfate as a primary receptor and transduces melanoma cells more efficiently than all serotypes. Further, chimeric-1829 demonstrates altered tropism in rodent skeletal muscle, liver, and brain including nonhuman primates. We determined a unique immunological profile based on neutralizing antibody (NAb) titer and crossreactivity studies strongly supporting isolation of a synthetic laboratory-derived capsid variant. Application of this technology to alternative cell/tissue types using AAV or other viral capsid sequences is likely to yield a new class of biological nanoparticles as vectors for human gene transfer.

Indexed as

DNA ShufflingNanoparticlesAnimalsAntibodiesBrainCapsidCricetinaeDependovirusDirected Molecular EvolutionGene LibraryGenetic VectorsGenome, ViralHumansLiverMelanomaMiceAntibodies

Identifiers

PMID18500254
PMCPMC2632803
OpenAlexW2113082692

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.