Evidence map›Paper›PMID 18499731›Full record

ArticleEndocrine-related cancer2008

Evaluation of a functional epigenetic approach to identify promoter region methylation in phaeochromocytoma and neuroblastoma.

Caroline D E Margetts, Mark Morris, Dewi Astuti, Dean C Gentle, Alberto Cascon, Fiona E McRonald, Daniel Catchpoole, Mercedes Robledo, Hartmut P H Neumann, Farida Latif and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Endocrine-related cancer, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. EMP3: A promising biomarker for tumor prognosis and targeted cancer therapy.Cancer biomarkers : section A of Disease markers · 2024
    Review
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  5. Gain-of-function mutations in DNMT3A in patients with paraganglioma.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 4 countries.

Caroline D E MargettsDepartment of Medical and Molecular Genetics, Institute of Biomedical Research Cancer Research, UK.
Mark Morris
Dewi Astuti
Dean C Gentle
Alberto Cascon
Fiona E McRonald
Daniel Catchpoole
Mercedes Robledo
Hartmut P H Neumann
Farida Latif
Eamonn R Maher
Cancer Research UK · GBUniversity of Birmingham · GBCentre for Biomedical Network Research on Rare Diseases · ESChildren's Hospital at Westmead · AUSpanish National Cancer Research Centre · ESUniversity of Freiburg · DE

Funding

Cancer Research UK
6 · The paper itself

Abstract

The molecular genetics of inherited phaeochromocytoma have received considerable attention, but the somatic genetic and epigenetic events that characterise tumourigenesis in sporadic phaeochromocytomas are less well defined. Previously, we found considerable overlap between patterns of promoter region tumour suppressor gene (TSG) hypermethylation in two neural crest tumours, neuroblastoma and phaeochromocytoma. In order to identify candidate biomarkers and epigenetically inactivated TSGs in phaeochromocytoma and neuroblastoma, we characterised changes in gene expression in three neuroblastoma cell lines after treatment with the demethylating agent 5-azacytidine. Promoter region methylation status was then determined for 28 genes that demonstrated increased expression after demethylation. Three genes HSP47, homeobox A9 (HOXA9) and opioid binding protein (OPCML) were methylated in >10% of phaeochromocytomas (52, 17 and 12% respectively). Two of the genes, epithelial membrane protein 3 (EMP3) and HSP47, demonstrated significantly more frequent methylation in neuroblastoma than phaeochromocytoma. These findings extend epigenotype of phaeochromocytoma and identify candidate genes implicated in sporadic phaeochromocytoma tumourigenesis.

Indexed as

DNA MethylationEpigenesis, GeneticPromoter Regions, GeneticAdrenal Gland NeoplasmsAdultCell Line, TumorCpG IslandsGene Expression ProfilingGenes, Tumor SuppressorHumansNeural CrestNeuroblastomaOligonucleotide Array Sequence AnalysisPheochromocytomaSequence Analysis, DNA

Identifiers

PMID18499731
PMCPMC2519165
OpenAlexW2104940468

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.