Evidence map›Paper›PMID 18499678›Full record

ArticleThe Journal of biological chemistry2008

Histone Arg modifications and p53 regulate the expression of OKL38, a mediator of apoptosis.

Hongjie Yao, Pingxin Li, Bryan J Venters, Suting Zheng, Paul R Thompson, B Franklin Pugh, Yanming Wang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 163 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Epigenetic Regulation of Floral Transition.Plants (Basel, Switzerland) · 2025
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  6. Review
  7. Review
  8. TheBiomolecules · 2025
    Review
  9. Article
  10. Review
  11. Citrullination and the protein code: crosstalk between post-translational modifications in cancer.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  12. New insights into cancer: MDM2 binds to the citrullinating enzyme PADI4.Protein science : a publication of the Protein Society · 2023
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. The virtues and vices of protein citrullination.Royal Society open science · 2022
    Review
  19. Review
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Hongjie YaoCenter for Gene Regulation, Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA.
Pingxin Li
Bryan J Venters
Suting Zheng
Paul R Thompson
B Franklin Pugh
Yanming Wang
Pennsylvania State University · USUniversity of South Carolina · US

Funding

Haloacetamidine based inactivators of Protein Arginine Deiminase 4R01GM079357 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI THOMPSON, PAUL R · 2007 to 2016
$3.3M
Molecular mechanisms in the regulation of p53 functions by PAD4R01CA136856 · NCI · PENNSYLVANIA STATE UNIVERSITY, THE · PI WANG, YANMING · 2009 to 2013
$1.3M
NCI NIH HHS R01 CA136856NIGMS NIH HHS GM 079357NIGMS NIH HHS R01 GM079357
6 · The paper itself

Abstract

Protein Arg methyltransferases function as coactivators of the tumor suppressor p53 to regulate gene expression. Peptidylarginine deiminase 4 (PAD4/PADI4) counteracts the functions of protein Arg methyltransferases in gene regulation by deimination and demethylimination. Here we show that the expression of a tumor suppressor gene, OKL38, is activated by the inhibition of PAD4 or the activation of p53 following DNA damage. Chromatin immunoprecipitation assays showed a dynamic change of p53 and PAD4 occupancy and histone Arg modifications at the OKL38 promoter during DNA damage, suggesting a direct role of PAD4 and p53 in the expression of OKL38. Furthermore, we found that OKL38 induces apoptosis through localization to mitochondria and induction of cytochrome c release. Together, our studies identify OKL38 as a novel p53 target gene that is regulated by PAD4 and plays a role in apoptosis.

Indexed as

ApoptosisApoptosis Regulatory ProteinsArginineCell Line, TumorCytochromes cDNA DamageGene Expression RegulationHistonesHumansHydrolasesMitochondriaPromoter Regions, GeneticProtein-Arginine DeiminasesProtein-Arginine Deiminase Type 4ProteinsProtein TransportApoptosis Regulatory ProteinsArginineCytochromes cHistonesHydrolasesOSGIN1 protein, humanPADI4 protein, humanProtein-Arginine DeiminasesProtein-Arginine Deiminase Type 4ProteinsTumor Suppressor Protein p53

Identifiers

PMID18499678
PMCPMC2459274
OpenAlexW2057896776

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.