Evidence map›Paper›PMID 18499674›Full record

ArticleThe Journal of biological chemistry2008

Influences of the N700S thrombospondin-1 polymorphism on protein structure and stability.

C Britt Carlson, Yuanyuan Liu, James L Keck, Deane F Mosher

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Variations of VEGFR2 Chemical Space: Stimulator and Inhibitory Peptides.International journal of molecular sciences · 2024
    Article
  2. Why do humans need thrombospondin-1?Journal of cell communication and signaling · 2023
    Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. THBS1 (thrombospondin-1).Atlas of genetics and cytogenetics in oncology and haematology · 2020
    Article
  8. Thrombospondin-4 in tissue remodeling.Matrix biology : journal of the International Society for Matrix Biology · 2019
    Review
  9. Article
  10. Article
  11. The thrombospondins.Cold Spring Harbor perspectives in biology · 2011
    Review
  12. Interactions among stalk modules of thrombospondin-1.The Journal of biological chemistry · 2009
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

C Britt CarlsonDepartment of Medicine and Biomolecular Chemistry, University of Wisconsin, Madison, WI 53706, USA.
Yuanyuan Liu
James L Keck
Deane F Mosher
University of Wisconsin–Madison · US

Funding

THROMBOSPONDIN &MAMMARY ENDOTHELIAL CELL PROLIFERATIONR01HL054462 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI MOSHER, DEANE FREMONT · 1995 to 2007
$3.1M
ACQUISITION OF MASS SPECTROMETER FOR CORE FACILITYS10RR013790 · NCRR · UNIVERSITY OF WISCONSIN MADISON · PI RAINES, RONALD T · 1999 to 1999
–
NCRR NIH HHS S10 RR 13790NHLBI NIH HHS HL 07899NHLBI NIH HHS HL 54462
6 · The paper itself

Abstract

Thrombospondins (THBSs) are multimodular, secreted proteins characterized by a signature domain comprising a unique set of 13 calcium-binding repeats flanked by epidermal growth factor (EGF)-like and lectin-like modules. A polymorphism that changes a conserved Asn to Ser at residue 700 in the most N-terminal calcium-binding repeat of THBS-1 (repeat 1C) is found in 8-10% of European populations and has been linked to increased risk of premature coronary artery disease. The Ser substitution leads to altered stability in the EGF-like and wire modules of the THBS-1 signature domain as assessed by differential scanning calorimetry carried out in 2 mm or 200 mum calcium. Studies of the melting profiles of the THBS-2 signature domain proteins with Asn or Ser at position 702 (homologous to 700 in THBS-1) revealed that the impact of the Ser allele is similar in both THBS-1 and THBS-2. Structure determination of the Ser(702) THBS-2 variant in 2 mm calcium showed that repeat 1C contains two bound calcium ions as in the crystal of the Asn(702) protein, including the ion that is coordinated by Asn(702), and is associated with changes in conformation of repeat 1C and the adjacent EGF-like modules. The Ser substitution leads to the decreased ability of soluble THBS-2 signature domain protein to bind 4B6.13, a conformation-sensitive monoclonal antibody that recognizes an epitope in repeat 1C. These results indicate that although THBS harboring the Ser allele binds a full complement of calcium ions, repeat 1C is altered, leading to destabilization of surrounding structures.

Indexed as

Amino Acid SequenceAsparagineCalciumCalorimetry, Differential ScanningConserved SequenceCrystallography, X-RayEpidermal Growth FactorHumansModels, MolecularMolecular Sequence DataMutationPolymorphism, GeneticProtein Structure, TertiarySequence AlignmentTemperatureThrombospondin 1AsparagineCalciumEpidermal Growth FactorThrombospondin 1Thrombospondin 2Thrombospondins

Identifiers

PMID18499674
PMCPMC2459288
OpenAlexW2075468691

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.