Evidence map›Paper›PMID 18499250›Full record

ArticleDevelopmental and comparative immunology2008

The PHD domain of the sea urchin RAG2 homolog, SpRAG2L, recognizes dimethylated lysine 4 in histone H3 tails.

David R Wilson, Darrell D Norton, Sebastian D Fugmann

Open access · greenAbstract read
In one paragraph

Article in Developmental and comparative immunology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. The origins of vertebrate adaptive immunity.Nature reviews. Immunology · 2010
    Review
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

David R WilsonLaboratory of Cellular and Molecular Biology, National Institute on Aging, National Institutes of Health, Gerontology Research Center, Baltimore, MD 21224, USA.
Darrell D Norton
Sebastian D Fugmann
National Institute on Aging · US

Funding

The role of the recombination activating genes 1 and 2 in sea urchin immunityZ01AG000388 · NIA · NATIONAL INSTITUTE ON AGING · PI FUGMANN, SEBASTIAN · 2007 to 2008
$994k
Intramural NIH HHS Z01 AG000388
6 · The paper itself

Abstract

V(D)J recombination is a somatic gene rearrangement process that assembles antigen receptor genes from individual segments during lymphocyte development. The access of the RAG1/RAG2 recombinase to these gene segments is regulated at the level of chromatin modifications, in particular histone tail modifications. Trimethylation of lysine 4 in histone H3 (H3K4me3) correlates with actively recombining gene elements, and this mark is recognized and interpreted by the plant homeodomain (PHD) of RAG2. Here we report that the PHD domain of the only known invertebrate homolog of RAG2, the SpRAG2L protein of the purple sea urchin (Strongylocentrotus purpuratus) also binds to methylated histones, but with a unique preference for H3K4me2. While the cognate substrate for the sea urchin RAG1L/RAG2L complex remains elusive, the affinity for histone tails and the nuclear localization of ectopically expressed SpRAG2L strongly support the model that this enzyme complex exerts its activity on DNA in the context of chromatin.

Indexed as

Amino Acid SequenceAnimalsCell LineConserved SequenceDNA-Binding ProteinsHistonesHumansLysineMethylationMiceMolecular Sequence DataMutationProtein BindingSea UrchinsSequence AlignmentDNA-Binding ProteinsHistonesLysine

Identifiers

PMID18499250
PMCPMC2518978
OpenAlexW2063472071

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.