Evidence map›Paper›PMID 18499210›Full record

ArticleVirology2008

Antibody elicited against the gp41 N-heptad repeat (NHR) coiled-coil can neutralize HIV-1 with modest potency but non-neutralizing antibodies also bind to NHR mimetics.

Josh D Nelson, Heather Kinkead, Florence M Brunel, Dan Leaman, Richard Jensen, John M Louis, Toshiaki Maruyama, Carole A Bewley, Katherine Bowdish, G Marius Clore and 6 more

Abstract read
In one paragraph

Article in Virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Stabilized trimeric peptide immunogens of the complete HIV-1 gp41 N-heptad repeat and their use as HIV-1 vaccine candidates.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. The high-affinity immunoglobulin receptor FcγRI potentiates HIV-1 neutralization via antibodies against the gp41 N-heptad repeat.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Review
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  13. Review
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  18. Article
  19. Article
  20. Neutralizing antibodies to HIV-1 induced by immunization.The Journal of experimental medicine · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Josh D NelsonDepartment of Immunology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Heather Kinkead
Florence M Brunel
Dan Leaman
Richard Jensen
John M Louis
Toshiaki Maruyama
Carole A Bewley
Katherine Bowdish
G Marius Clore
Philip E Dawson
Shana Frederickson
Rose G Mage
Douglas D Richman
Dennis R Burton
Michael B Zwick
Scripps Research Institute · USNational Institutes of Health · USAlexion Pharmaceuticals (United States) · USUniversity of California San Diego · US

Funding

Inhibitors and Probes of HIV-1 Cell FusionZIADK032103 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BEWLEY, CAROLE · 2009 to 2025
$12.5M
STRUCTURAL STUDIES OF FIV PROTEASE INHIBITOR COMPLEXESP01GM048870 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI OLSON, ARTHUR J. · 1992 to 2007
$10.3M
HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR01AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 1992 to 2013
$5.9M
X-ray structures of HIV-1 neutralizing sitesR01GM046192 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 1991 to 2008
$3.7M
Design of gp41 directed anti-HIV antibodiesZIADK029038 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI CLORE, G. MARIUS · 2009 to 2014
$2.5M
HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR37AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI BURTON, DENNIS R. · 1995 to 2004
$2.4M
Targeting neutralizing antibody-defined sites on HIV gp41 for vaccine designR01AI069993 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ZWICK, MICHAEL B · 2007 to 2011
$2.3M
SELECTING ENV TRIMERS IN HIV-VLP VACCINE PRESENTATIONSR01AI058763 · NIAID · TORREY PINES INST FOR MOLECULAR STUDIES · PI BINLEY, JAMES M · 2004 to 2007
$1.9M
ANTIBODIES AGAINST HIV-1 gp41: TOOLS FOR VACCINE DESIGNR21AI058725 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI ZWICK, MICHAEL B · 2004 to 2005
$563k
The Rabbit Genome, Immune System and Ig GeneticsZIAAI000036 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MAGE, ROSE G. · 2009 to 2009
$1k
Intramural NIH HHSNIAID NIH HHS AI 058763NIAID NIH HHS AI 33292NIAID NIH HHS R01 AI033292NIAID NIH HHS R01 AI058763NIAID NIH HHS R01 AI069993NIAID NIH HHS R01 AI58763NIAID NIH HHS R21 AI058725NIAID NIH HHS R37 AI033292NIGMS NIH HHS GM-46192NIGMS NIH HHS P01 GM048870NIGMS NIH HHS R01 GM046192
6 · The paper itself

Abstract

Following CD4 receptor binding to the HIV-1 envelope spike (Env), the conserved N-heptad repeat (NHR) region of gp41 forms a coiled-coil that is a precursor to the fusion reaction. Although it has been a target of drug and vaccine design, there are few monoclonal antibody (mAb) tools with which to probe the antigenicity and immunogenicity specifically of the NHR coiled-coil. Here, we have rescued HIV-1-neutralizing anti-NHR mAbs from immune phage display libraries that were prepared (i) from b9 rabbits immunized with a previously described mimetic of the NHR coiled-coil, N35(CCG)-N13, and (ii) from an HIV-1 infected individual. We describe a rabbit single-chain Fv fragment (scFv), 8K8, and a human Fab, DN9, which specifically recognize NHR coiled-coils that are unoccupied by peptide corresponding to the C-heptad repeat or CHR region of gp41 (e.g. C34). The epitopes of 8K8 and DN9 were found to partially overlap with that of a previously described anti-NHR mAb, IgG D5; however, 8K8 and DN9 were much more specific than D5 for unoccupied NHR trimers. The mAbs, including a whole IgG 8K8 molecule, neutralized primary HIV-1 of clades B and C in a pseudotyped virus assay with comparable, albeit relatively modest potency. Finally, a human Fab T3 and a rabbit serum (both non-neutralizing) were able to block binding of D5 and 8K8 to a gp41 NHR mimetic, respectively, but not the neutralizing activity of these mAbs. We conclude from these results that NHR coiled-coil analogs of HIV-1 gp41 elicit many Abs during natural infection and through immunization, but that due to limited accessibility to the corresponding region on fusogenic gp41 few can neutralize. Caution is therefore required in targeting the NHR for vaccine design. Nevertheless, the mAb panel may be useful as tools for elucidating access restrictions to the NHR of gp41 and in designing potential improvements to mimetics of receptor-activated Env.

Indexed as

HIV AntibodiesAmino Acid SequenceAmino Acid SubstitutionAnimalsAntibodies, MonoclonalBinding SitesCardiolipinsCross ReactionsEpitopesHIV-1HIV Envelope Protein gp41HumansIn Vitro TechniquesMolecular MimicryMolecular Sequence DataNeutralization TestsAntibodies, MonoclonalCardiolipinsEpitopesgp41 protein, Human immunodeficiency virus 1HIV AntibodiesHIV Envelope Protein gp41

Identifiers

PMID18499210
PMCPMC2493441
OpenAlexW2007202358

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.